Evidence map›Paper›PMID 17460045›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.

Brian Palenik, Jane Grimwood, Andrea Aerts, Pierre Rouzé, Asaf Salamov, Nicholas Putnam, Chris Dupont, Richard Jorgensen, Evelyne Derelle, Stephane Rombauts and 28 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 278 papers.

0numbers the graph read from it
0cells of the map it votes in
278citing papers in PubMed
34.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

278 citing papers in PubMed, 633 citations in OpenAlex.

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  16. Review
  17. Conserved carotenoid pigmentation in reproductive organs of Charophyceae.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  18. Review
  19. Genome ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

218 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 13 institutions in 4 countries.

Brian PalenikScripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093-0202, USA. bpalenik@ucsd.edu
Jane Grimwood
Andrea Aerts
Pierre Rouzé
Asaf Salamov
Nicholas Putnam
Chris Dupont
Richard Jorgensen
Evelyne Derelle
Stephane Rombauts
Kemin Zhou
Robert Otillar
Sabeeha S Merchant
Sheila Podell
Terry Gaasterland
Carolyn Napoli
Karla Gendler
Andrea Manuell
Vera Tai
Olivier Vallon
Gwenael Piganeau
Séverine Jancek
Marc Heijde
Kamel Jabbari
Chris Bowler
Martin Lohr
Steven Robbens
Gregory Werner
Inna Dubchak
Gregory J Pazour
Qinghu Ren
Ian Paulsen
Chuck Delwiche
Jeremy Schmutz
Daniel Rokhsar
Yves Van de Peer
Hervé Moreau
Igor V Grigoriev
Joint Genome Institute · USScripps Institution of Oceanography · USCentre National de la Recherche Scientifique · FRUniversity of Arizona · USVlaams Instituut voor Biotechnologie · BEUniversity of Chicago · USGhent University · BEJohannes Gutenberg University Mainz · DEScripps Research Institute · USSorbonne Université · FRUniversity of California, Los Angeles · USUniversity of Maryland, College Park · USUniversity of Massachusetts Chan Medical School · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The smallest known eukaryotes, at approximately 1-mum diameter, are Ostreococcus tauri and related species of marine phytoplankton. The genome of Ostreococcus lucimarinus has been completed and compared with that of O. tauri. This comparison reveals surprising differences across orthologous chromosomes in the two species from highly syntenic chromosomes in most cases to chromosomes with almost no similarity. Species divergence in these phytoplankton is occurring through multiple mechanisms acting differently on different chromosomes and likely including acquisition of new genes through horizontal gene transfer. We speculate that this latter process may be involved in altering the cell-surface characteristics of each species. In addition, the genome of O. lucimarinus provides insights into the unique metal metabolism of these organisms, which are predicted to have a large number of selenocysteine-containing proteins. Selenoenzymes are more catalytically active than similar enzymes lacking selenium, and thus the cell may require less of that protein. As reported here, selenoenzymes, novel fusion proteins, and loss of some major protein families including ones associated with chromatin are likely important adaptations for achieving a small cell size.

Indexed as

Adaptation, PhysiologicalBiological EvolutionCell NucleusChlorophytaChromosomesEnvironmentEukaryotic CellsGene Transfer, HorizontalGenomeMetalsMolecular Sequence DataPlanktonSelenoproteinsVitaminsMetalsSelenoproteinsVitamins

Identifiers

PMID17460045
PMCPMC1863510
OpenAlexW2123550792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.