Evidence map›Paper›PMID 17459922›Full record

ArticleJournal of virology2007

Atypical bZIP domain of viral transcription factor contributes to stability of dimer formation and transcriptional function.

Celine Schelcher, Salama Al Mehairi, Elizabeth Verrall, Questa Hope, Kirsty Flower, Beth Bromley, Derek N Woolfson, Michelle J West, Alison J Sinclair

Abstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Celine SchelcherSchool of Life Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom.
Salama Al Mehairi
Elizabeth Verrall
Questa Hope
Kirsty Flower
Beth Bromley
Derek N Woolfson
Michelle J West
Alison J Sinclair

Funding

Medical Research Council G0400735
6 · The paper itself

Abstract

The Epstein-Barr virus transcription factor Zta (encoded by BZLF1) is a bZIP protein containing an alpha-helical coiled-coil homodimerization motif (zipper). The Zta zipper forms less-stable dimers than other bZIP proteins, and an adjacent region (CT) interacts with the zipper to form a novel structure that is proposed to strengthen the dimer. Here we question the role of the CT region for Zta function. Cross-linking experiments demonstrate that the entire CT region lies adjacent to the zipper. Detailed analyses of Zta truncation mutations identify an involvement of the proximal CT region (221 to 230) in dimer formation with a further contribution from the distal region (236 to 243). Biophysical analyses reveal that residues 221 to 230 enhance the stability of the coiled coil. The ability of the Zta truncation mutants to interact with three Zta-binding sites also requires the proximal CT region. Fine mapping of DNA-binding requirements highlighted the contribution of these amino acids for Zta function. Thus, the proximal part of the CT region is required to aid the dimerization of Zta and thereby its DNA-binding ability. In contrast, although the distal part of the CT region aids dimerization, it promotes only a modest increase in DNA binding. To probe this further, we defined the contribution from the CT region for Zta to transactivate a promoter embedded within the viral genome. From this we conclude that the proximal part of the CT region is absolutely required, whereas the distal part is dispensable.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsCell LineDimerizationDNA-Binding ProteinsDNA, ViralGenome, ViralHerpesvirus 4, HumanHumansPromoter Regions, GeneticSequence DeletionTrans-ActivatorsTranscriptional ActivationTranscription, GeneticViral ProteinsBZLF1 protein, Herpesvirus 4, HumanDNA-Binding ProteinsDNA, ViralTrans-ActivatorsViral Proteins

Identifiers

PMID17459922
PMCPMC1933325

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.