Evidence map›Paper›PMID 17458547›Full record

ArticleApplied microbiology and biotechnology2007

Functional analysis of genes involved in the biosynthesis of isoprene in Bacillus subtilis.

Mattijs K Julsing, Michael Rijpkema, Herman J Woerdenbag, Wim J Quax, Oliver Kayser

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Microbial (Frontiers in bioengineering and biotechnology · 2022
    Review
  7. Positioning Bacillus subtilis as terpenoid cell factory.Journal of applied microbiology · 2021
    Review
  8. Are Bacterial Persisters Dormant Cells Only?Frontiers in microbiology · 2021
    Review
  9. Advances in Enhanced Menaquinone-7 Production FromFrontiers in bioengineering and biotechnology · 2021
    Review
  10. Frontiers in microbiology · 2021
    Article
  11. Review
  12. Production of Squalene inJournal of agricultural and food chemistry · 2020
    Article
  13. Article
  14. Draft Genome Sequence ofMicrobiology resource announcements · 2020
    Article
  15. Impact of Fatty-Acid Labeling ofFrontiers in microbiology · 2020
    Article
  16. Review
  17. Metabolic Engineering ofFrontiers in microbiology · 2019
    Article
  18. Review
  19. A second RNA-binding protein is essential for ethanol tolerance provided by the bacterial OLE ribonucleoprotein complex.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Large Noncoding RNAs in Bacteria.Microbiology spectrum · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mattijs K JulsingDepartment of Pharmaceutical Biology, Graduate School for Drug Exploration (GUIDE), University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
Michael Rijpkema
Herman J Woerdenbag
Wim J Quax
Oliver Kayser
University of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In comparison to other bacteria Bacillus subtilis emits the volatile compound isoprene in high concentrations. Isoprene is the smallest representative of the natural product group of terpenoids. A search in the genome of B. subtilis resulted in a set of genes with yet unknown function, but putatively involved in the methylerythritol phosphate (MEP) pathway to isoprene. Further identification of these genes would give the possibility to engineer B. subtilis as a host cell for the production of terpenoids like the valuable plant-produced drugs artemisinin and paclitaxel. Conditional knock-out strains of putative genes were analyzed for the amount of isoprene emitted. Differences in isoprene emission were used to identify the function of the enzymes and of the corresponding selected genes in the MEP pathway. We give proof on a biochemical level that several of these selected genes from this species are involved in isoprene biosynthesis. This opens the possibilities to investigate the physiological function of isoprene emission and to increase the endogenous flux to the terpenoid precursors, isopentenyl diphosphate and dimethylallyl diphosphate, for the heterologous production of more complex terpenoids in B. subtilis.

Indexed as

Bacillus subtilisButadienesChromatography, GasHemiterpenesOrganophosphorus CompoundsPentanesButadienesHemiterpenesisopentenyl pyrophosphateisopreneOrganophosphorus CompoundsPentanes

Identifiers

PMID17458547
PMCPMC1914294
OpenAlexW2132958754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.