ArticleJournal of molecular evolution2007
Reduced selection for codon usage bias in Drosophila miranda.
Article in Journal of molecular evolution, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
20 citing papers in PubMed.
- Strategies and Patterns of Codon Bias in Molluscum Contagiosum Virus.Pathogens (Basel, Switzerland) · 2021Article
- Expression-Linked Patterns of Codon Usage, Amino Acid Frequency, and Protein Length in the Basally Branching Arthropod Parasteatoda tepidariorum.Genome biology and evolution · 2016Article
- Comparative Mitogenomics of the Genus Odontobutis (Perciformes: Gobioidei: Odontobutidae) Revealed Conserved Gene Rearrangement and High Sequence Variations.International journal of molecular sciences · 2015Article
- Codon and Amino Acid Usage Are Shaped by Selection Across Divergent Model Organisms of the Pancrustacea.G3 (Bethesda, Md.) · 2015Article
- Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura.G3 (Bethesda, Md.) · 2014Article
- Effective population size does not predict codon usage bias in mammals.Ecology and evolution · 2014Article
- A description of the complete mitochondrial genomes of Amphiporus formidabilis, Prosadenoporus spectaculum and Nipponnemertes punctatula (Nemertea: Hoplonemertea: Monostilifera).Molecular biology reports · 2014Article
- The first complete mitochondrial genome from Bostrychus genus (Bostrychus sinensis) and partitioned Bayesian analysis of Eleotridae fish phylogeny.Journal of genetics · 2013Article
- Complete mitochondrial genome sequence of Catla catla and its phylogenetic consideration.Molecular biology reports · 2012Article
- The complete mitochondrial genome of the pink stem borer, Sesamia inferens, in comparison with four other Noctuid moths.International journal of molecular sciences · 2012Article
- Characterization of the complete mitochondrial genomes of Cnaphalocrocis medinalis and Chilo suppressalis (Lepidoptera: Pyralidae).International journal of biological sciences · 2012Article
- Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis.Journal of molecular evolution · 2010Article
- Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. miranda.Genetics · 2010Article
- Article
- Patterns of DNA-sequence divergence between Drosophila miranda and D. pseudoobscura.Journal of molecular evolution · 2009Article
- Locus-specific decoupling of base composition evolution at synonymous sites and introns along the Drosophila melanogaster and Drosophila sechellia lineages.Genome biology and evolution · 2009Article
- Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes.BMC evolutionary biology · 2008Article
- Molecular evolution of synonymous codon usage in Populus.BMC evolutionary biology · 2008Article
- A new test for selection applied to codon usage in Drosophila simulans and D. mauritiana.Journal of molecular evolution · 2008Article
- Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome.Genome research · 2007Article
Corrections and comments
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Authors and funding
1 author.
Funding
Abstract
Biased codon usage in many species results from a balance among mutation, weak selection, and genetic drift. Here I show that selection to maintain biased codon usage is reduced in Drosophila miranda relative to its ancestor. Analyses of mutation patterns in noncoding DNA suggest that the extent of this reduction cannot be explained by changes in mutation bias or by biased gene conversion. Low levels of variability in D. miranda relative to its sibling species, D. pseudoobscura, suggest that it has a much smaller effective population size. Reduced codon usage bias in D. miranda may thus result from the reduced efficacy of selection against newly arising mutations to unpreferred codons.
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Registered trials
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