Evidence map›Paper›PMID 17457615›Full record

ArticleHuman genetics2007

Complex chromosome 17p rearrangements associated with low-copy repeats in two patients with congenital anomalies.

L E L M Vissers, P Stankiewicz, S A Yatsenko, E Crawford, H Creswick, V K Proud, B B A de Vries, R Pfundt, C L M Marcelis, J Zackowski and 4 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Mechanisms of change in gene copy number.Nature reviews. Genetics · 2009
    Review
  12. Review
  13. Article
  14. Review
  15. Copy number variation in human health, disease, and evolution.Annual review of genomics and human genetics · 2009
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

L E L M VissersDepartment of Human Genetics, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands.
P Stankiewicz
S A Yatsenko
E Crawford
H Creswick
V K Proud
B B A de Vries
R Pfundt
C L M Marcelis
J Zackowski
W Bi
A Geurts van Kessel
J R Lupski
J A Veltman
Baylor College of Medicine · USRadboud University Medical Center · NLChildren's Hospital of The King's Daughters · USRadboud University Nijmegen · NLSentara Norfolk General Hospital · US

Funding

UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI ZOGHBI, HUDA Y · 1988 to 2013
$29.4M
Telomere integrity of de novo terminal deletionsP01HD039420 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2001 to 2005
$4.7M
NICHD NIH HHS HD24064NICHD NIH HHS P01 HD039420NICHD NIH HHS P01 HD39420NICHD NIH HHS P30 HD024064
6 · The paper itself

Abstract

Recent molecular cytogenetic data have shown that the constitution of complex chromosome rearrangements (CCRs) may be more complicated than previously thought. The complicated nature of these rearrangements challenges the accurate delineation of the chromosomal breakpoints and mechanisms involved. Here, we report a molecular cytogenetic analysis of two patients with congenital anomalies and unbalanced de novo CCRs involving chromosome 17p using high-resolution array-based comparative genomic hybridization (array CGH) and fluorescent in situ hybridization (FISH). In the first patient, a 4-month-old boy with developmental delay, hypotonia, growth retardation, coronal synostosis, mild hypertelorism, and bilateral club feet, we found a duplication of the Charcot-Marie-Tooth disease type 1A and Smith-Magenis syndrome (SMS) chromosome regions, inverted insertion of the Miller-Dieker lissencephaly syndrome region into the SMS region, and two microdeletions including a terminal deletion of 17p. The latter, together with a duplication of 21q22.3-qter detected by array CGH, are likely the unbalanced product of a translocation t(17;21)(p13.3;q22.3). In the second patient, an 8-year-old girl with mental retardation, short stature, microcephaly and mild dysmorphic features, we identified four submicroscopic interspersed 17p duplications. All 17 breakpoints were examined in detail by FISH analysis. We found that four of the breakpoints mapped within known low-copy repeats (LCRs), including LCR17pA, middle SMS-REP/LCR17pB block, and LCR17pC. Our findings suggest that the LCR burden in proximal 17p may have stimulated the formation of these CCRs and, thus, that genome architectural features such as LCRs may have been instrumental in the generation of these CCRs.

Indexed as

Chromosome AberrationsAbnormalities, MultipleChildChromosome BreakageChromosomes, Human, Pair 17CytogeneticsDNAFemaleHumansInfantInfant, NewbornIn Situ Hybridization, FluorescenceMaleNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisPregnancyDNA

Identifiers

PMID17457615
PMCPMC1914245
OpenAlexW2053806191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.