Evidence map›Paper›PMID 17456778›Full record

ArticleThe American journal of pathology2007

Epigenetic reversion of breast carcinoma phenotype is accompanied by changes in DNA sequestration as measured by AluI restriction enzyme.

Tone Sandal, Klara Valyi-Nagy, Virginia A Spencer, Robert Folberg, Mina J Bissell, Andrew J Maniotis

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

  1. Tumor reversion: a dream or a reality.Biomarker research · 2021
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. The difficulty of targeting cancer stem cell niches.Clinical cancer research : an official journal of the American Association for Cancer Research · 2010
    Review
  10. Seed in soil, with an epigenetic view.Biochimica et biophysica acta · 2009
    Review
  11. Review
  12. Article
  13. The tumor microenvironment is a dominant force in multidrug resistance.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Tone SandalDepartment of Pathology, University of Illinois at Chicago, 840 S. Wood St., 130 CSN (MC 847), Chicago, IL 60612, USA.
Klara Valyi-Nagy
Virginia A Spencer
Robert Folberg
Mina J Bissell
Andrew J Maniotis
University of Illinois Chicago · USLawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

MICROCIRCULATION OF UVEAL MELANOMAR01EY010457 · NEI · UNIVERSITY OF IOWA · PI FOLBERG, ROBERT · 1994 to 2007
$2.6M
NEI NIH HHS EY10457NEI NIH HHS R01 EY010457
6 · The paper itself

Abstract

The importance of microenvironment and context in regulation of tissue-specific genes is well established. DNA exposure to or the sequestration from nucleases detects differences in higher order chromatin structure in intact cells without disturbing cellular or tissue architecture. To investigate the relationship between chromatin organization and tumor phenotype, we used an established three-dimensional assay in which normal and malignant human breast cells can be easily distinguished by the morphology of the structures they make (acinus-like versus tumor-like, respectively). We show that these phenotypes can be distinguished also by sensitivity to AluI digestion in which the malignant cells resist digestion relative to nonmalignant cells. Treatment of T4-2 breast cancer cells in three-dimensional culture with cAMP analogs or a phosphatidylinositol 3-kinase inhibitor not only reverted their phenotype from nonpolar to polar acinar-like structures but also enhanced chromatin sensitivity to AluI. By using different cAMP analogs, we show that cAMP-induced phenotypic reversion, polarization, and shift in DNA organization act through a cAMP-dependent protein-kinase A-coupled signaling pathway. Importantly, inhibitory antibody to fibronectin produced the same effect. These experiments underscore the concept that modifying the tumor microenvironment can alter the organization of tumor cells and demonstrate that architecture and global chromatin organization are coupled and highly plastic.

Indexed as

Epigenesis, GeneticPhenotypeBreast NeoplasmsCell Culture TechniquesCell Line, TumorCell Transformation, NeoplasticCyclic AMPDNA, NeoplasmDNA Restriction EnzymesFemaleFlow CytometryFluorescent Antibody TechniqueHumansMicroscopy, ConfocalCyclic AMPDNA, NeoplasmDNA Restriction Enzymes

Identifiers

PMID17456778
PMCPMC1854967
OpenAlexW2014540334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.