Evidence map›Paper›PMID 17456747›Full record

ArticleProtein science : a publication of the Protein Society2007

Cell-free complements in vivo expression of the E. coli membrane proteome.

David F Savage, Corey L Anderson, Yaneth Robles-Colmenares, Zachary E Newby, Robert M Stroud

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  17. Article
  18. Efficient cell-free production of olfactory receptors: detergent optimization, structure, and ligand binding analyses.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  19. Functional protein expression from a DNA based wheat germ cell-free system.Journal of structural and functional genomics · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David F SavageGraduate Group in Biophysics, University of California at San Francisco, San Francisco, California 94158-2517, USA.
Corey L Anderson
Yaneth Robles-Colmenares
Zachary E Newby
Robert M Stroud

Funding

SPECIALIZED CENTER FOR THE PROTEIN STRUCTURE INITIATIVEU54GM074929 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOE, SENYON · 2005 to 2009
$16.6M
NIGMS NIH HHS GM074929NIGMS NIH HHS U54 GM074929
6 · The paper itself

Abstract

Reconstituted cell-free (CF) protein expression systems hold the promise of overcoming the traditional barriers associated with in vivo systems. This is particularly true for membrane proteins, which are often cytotoxic and due to the nature of the membrane, difficult to work with. To evaluate the potential of cell-free expression, we cloned 120 membrane proteins from E. coli and compared their expression profiles in both an E. coli in vivo system and an E. coli-derived cell-free system. Our results indicate CF is a more robust system and we were able to express 63% of the targets in CF, compared to 44% in vivo. To benchmark the quality of CF produced protein, five target membrane proteins were purified and their homogeneity assayed by gel filtration chromatography. Finally, to demonstrate the ease of amino acid labeling with CF, a novel membrane protein was substituted with selenomethionine, purified, and shown to have 100% incorporation of the unnatural amino acid. We conclude that CF is a novel, robust expression system capable of expressing more proteins than an in vivo system and suitable for production of membrane proteins at the milligram level.

Indexed as

Amino Acid SequenceBase SequenceCell-Free SystemEscherichia coliEscherichia coli ProteinsGene ExpressionMembrane ProteinsMolecular Sequence DataProteomeEscherichia coli ProteinsMembrane ProteinsProteome

Identifiers

PMID17456747
PMCPMC2206641

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.