Evidence map›Paper›PMID 17456005›Full record

ArticlePLoS biology2007

Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.

Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F Wieschaus

Erratum issuedAbstract read
In one paragraph

Article in PLoS biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 171 papers.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed.

  1. Article
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  13. Article
  14. Review
  15. Article
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  17. Article
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  19. Article
  20. Article

111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Stefano De RenzisHoward Hughes Medical Institute, Department of Molecular Biology, Princeton University, New Jersey, United States of America. stefanod@Princeton.edu
Olivier Elemento
Saeed Tavazoie
Eric F Wieschaus

Funding

Predictive Learning of Transcriptional NetworksR01HG003219 · NHGRI · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2004 to 2015
$3.7M
OOGENESIS AND EARLY EMBRYOGENESIS IN DROSOPHILAR37HD015587 · NICHD · PRINCETON UNIVERSITY · PI WIESCHAUS, ERIC F. · 1989 to 2015
$1.9M
Predictive Learning of Transcriptional NetworksR56HG003219 · NHGRI · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2008 to 2008
$383k
NHGRI NIH HHS 5R01 HG3219-3NHGRI NIH HHS R56 HG003219NICHD NIH HHS 5R37HD15587NICHD NIH HHS R37 HD015587
6 · The paper itself

Abstract

During the maternal-to-zygotic transition, a developing embryo integrates post-transcriptional regulation of maternal mRNAs with transcriptional activation of its own genome. By combining chromosomal ablation in Drosophila with microarray analysis, we characterized the basis of this integration. We show that the expression profile for at least one third of zygotically active genes is coupled to the concomitant degradation of the corresponding maternal mRNAs. The embryo uses transcription and degradation to generate localized patterns of expression, and zygotic transcription to degrade distinct classes of maternal transcripts. Although degradation does not appear to involve a simple regulatory code, the activation of the zygotic genome starts from intronless genes sharing a common cis-element. This cis-element interacts with a single protein, the Bicoid stability factor, and acts as a potent enhancer capable of timing the activity of an exogenous transactivator. We propose that this regulatory mode links morphogen gradients with temporal regulation during the maternal-to-zygotic transition.

Indexed as

Chromosome DeletionGene Expression Regulation, DevelopmentalAnimalsBase SequenceDown-RegulationDrosophila melanogasterDrosophila ProteinsFemaleGene Expression ProfilingRNA-Binding ProteinsRNA, MessengerTranscriptional ActivationZygotebicoid stability factor, DrosophilaDrosophila ProteinsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID17456005
PMCPMC1854917

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.