Evidence map›Paper›PMID 17452446›Full record

ArticleMolecular and cellular biology2007

Potential interface between ribosomal protein production and pre-rRNA processing.

Dipayan Rudra, Jaideep Mallick, Yu Zhao, Jonathan R Warner

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
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  11. Yeast Crf1p: An activator in need is an activator indeed.Computational and structural biotechnology journal · 2022
    Review
  12. Review
  13. Regulation of ribosomal protein genes: An ordered anarchy.Wiley interdisciplinary reviews. RNA · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dipayan RudraDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Jaideep Mallick
Yu Zhao
Jonathan R Warner
Albert Einstein College of Medicine · US

Funding

RIBOSOMAL PROTEIN GENES OF SACCHAROMYCES CEREVISIAER01GM025532 · NIGMS · YESHIVA UNIVERSITY · PI WARNER, JONATHAN R. · 1985 to 2010
$6.2M
NIGMS NIH HHS GM25532NIGMS NIH HHS R01 GM025532
6 · The paper itself

Abstract

It has become clear that in Saccharomyces cerevisiae the transcription of ribosomal protein genes, which makes up a major proportion of the total transcription by RNA polymerase II, is controlled by the interaction of three transcription factors, Rap1, Fhl1, and Ifh1. Of these, only Rap1 binds directly to DNA and only Ifh1 is absent when transcription is repressed. We have examined further the nature of this interaction and find that Ifh1 is actually associated with at least two complexes. In addition to its association with Rap1 and Fhl1, Ifh1 forms a complex (CURI) with casein kinase 2 (CK2), Utp22, and Rrp7. Fhl1 is loosely associated with the CURI complex; its absence partially destabilizes the complex. The CK2 within the complex phosphorylates Ifh1 in vitro but no other members of the complex. Two major components of this complex, Utp22 and Rrp7, are essential participants in the processing of pre-rRNA. Depletion of either protein, but not of other proteins in the early processing steps, brings about a substantial increase in ribosomal protein mRNA. We propose a model in which the CURI complex is a key mediator between the two parallel pathways necessary for ribosome synthesis: the transcription and processing of pre-rRNA and the transcription of ribosomal protein genes.

Indexed as

RNA Processing, Post-TranscriptionalCasein Kinase IIModels, BiologicalMolecular WeightMultiprotein ComplexesPhosphorylationProtein BindingRibosomal ProteinsRNA PrecursorsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThermodynamicsTranscription, GeneticCasein Kinase IIMultiprotein ComplexesRibosomal ProteinsRNA PrecursorsSaccharomyces cerevisiae Proteins

Identifiers

PMID17452446
PMCPMC1951472
OpenAlexW2135573097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.