Evidence map›Paper›PMID 17451601›Full record

ArticleRetrovirology2007

hnRNP E1 and E2 have distinct roles in modulating HIV-1 gene expression.

Kathryn Woolaway, Kengo Asai, Andrew Emili, Alan Cochrane

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 49 citations in OpenAlex.

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  12. Scaffold attachment factor B suppresses HIV-1 infection of CD4The Journal of biological chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kathryn WoolawayDepartment of Molecular and Medical Genetics, University of Toronto Toronto, Ontario, Canada. kew@hotmail.co.uk <kew@hotmail.co.uk>
Kengo Asai
Andrew Emili
Alan Cochrane
University of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pre-mRNA processing, including 5' end capping, splicing, and 3' end cleavage/polyadenylation, are events coordinated by transcription that can influence the subsequent export and translation of mRNAs. Coordination of RNA processing is crucial in retroviruses such as HIV-1, where inefficient splicing and the export of intron-containing RNAs are required for expression of the full complement of viral proteins. RNA processing can be affected by both viral and cellular proteins, and in this study we demonstrate that a member of the hnRNP E family of proteins can modulate HIV-1 RNA metabolism and expression. We show that hnRNP E1/E2 are able to interact with the ESS3a element of the bipartite ESS in tat/rev exon 3 of HIV-1 and that modulation of hnRNP E1 expression alters HIV-1 structural protein synthesis. Overexpression of hnRNP E1 leads to a reduction in Rev, achieved in part through a decrease in rev mRNA levels. However, the reduction in Rev levels cannot fully account for the effect of hnRNP E1, suggesting that hmRNP E1 might also act to suppress viral RNA translation. Deletion mutagenesis determined that the C-terminal end of hnRNP E1 was required for the reduction in Rev expression and that replacing this portion of hnRNP E1 with that of hnRNP E2, despite the high degree of conservation, could not rescue the loss of function.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceBase SequenceDNA-Binding ProteinsGene Expression Regulation, ViralGene Products, revGenes, revHeLa CellsHeterogeneous-Nuclear RibonucleoproteinsHIV-1HIV Core Protein p24HIV Envelope Protein gp120HIV InfectionsHumansMolecular Sequence DataProtein BiosynthesisAdaptor Proteins, Signal TransducingDNA-Binding ProteinsGene Products, revHeterogeneous-Nuclear RibonucleoproteinsHIV Core Protein p24HIV Envelope Protein gp120KHDRBS1 protein, humanKHDRBS2 protein, humanrev Gene Products, Human Immunodeficiency Virusrev protein, Human Immunodeficiency Virus-1RNA-Binding ProteinsRNA, MessengerRNA, Viral

Identifiers

PMID17451601
PMCPMC1863430
OpenAlexW2031401138

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.