Evidence map›Paper›PMID 17449661›Full record

ArticleBiophysical journal2007

Energy landscape of chelated uranyl: antibody interactions by dynamic force spectroscopy.

Michael Odorico, Jean-Marie Teulon, Thérèse Bessou, Claude Vidaud, Laurent Bellanger, Shu-wen W Chen, Eric Quéméneur, Pierre Parot, Jean-Luc Pellequer

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Force measurement enabling precise analysis by dynamic force spectroscopy.International journal of molecular sciences · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Michael OdoricoCEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France.
Jean-Marie Teulon
Thérèse Bessou
Claude Vidaud
Laurent Bellanger
Shu-wen W Chen
Eric Quéméneur
Pierre Parot
Jean-Luc Pellequer
Commissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut de Chimie Séparative de Marcoule · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We used dynamic force spectroscopy (DFS) to explore the energy landscape of interactions between a chelated uranyl compound and a monoclonal antibody raised against the uranyl-dicarboxy-phenanthroline complex. We estimated the potential energy barrier widths and the relevant thermodynamic rate constants along the dissociation coordinate. Using atomic force microscopy, four different experimental setups with or without the uranyl ion in the chelate ligand, we have distinguished specific and nonspecific binding in the binding affinity of the uranyl compound to the antibody. The force loading rates for our system were measured from 15 to 26,400 pN/s. The results showed two regimes in the plot of the most probable unbinding force versus the logarithm of the loading rate, revealing the presence of two (at least) activation barriers. Analyses of DFS suggest parallel multivalent binding present in either regime. We have also built a molecular model for the variable fragment of the antibody and used computational graphics to dock the chelated uranyl ion into the binding pocket. The structural analysis led us to hypothesize that the two regimes originate from two interaction modes: the first one corresponds to an energy barrier with a very narrow width of 0.5 +/- 0.2 A, inferring dissociation of the uranyl ion from its first coordination shell (Asp residue); the second one with a broader energy barrier width (3.9 +/- 0.3 A) infers the entire chelate compound dissociated from the antibody. Our study highlights the sensitivity of DFS experiments to dissect protein-metal compound interactions.

Indexed as

Antibodies, MonoclonalBinding SitesBiophysical PhenomenaBiophysicsChelating AgentsIn Vitro TechniquesMicroscopy, Atomic ForceModels, MolecularPhenanthrolinesProtein ConformationThermodynamicsUraniumAntibodies, MonoclonalChelating AgentsPhenanthrolinesUranium

Identifiers

PMID17449661
PMCPMC1896262
OpenAlexW2023495437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.