Evidence map›Paper›PMID 17448514›Full record

ArticleVirology2007

Transcriptional profile of Rous Sarcoma Virus transformed chicken embryo fibroblasts reveals new signaling targets of viral-src.

Kathryn Masker, Alicia Golden, Christian J Gaffney, Virginia Mazack, William F Schwindinger, Weizhou Zhang, Lu-Hai Wang, David J Carey, Marius Sudol

Open access · greenAbstract read
In one paragraph

Article in Virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kathryn MaskerWeis Center for Research, Danville, PA 17822-2608, USA.
Alicia Golden
Christian J Gaffney
Virginia Mazack
William F Schwindinger
Weizhou Zhang
Lu-Hai Wang
David J Carey
Marius Sudol
Geisinger Medical Center · USIcahn School of Medicine at Mount Sinai · US

Funding

Viral Vector, Cell Line, Tissue & Mouse Model Production, Validation & ProcessingP01DK062345 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI WILSON, PATRICIA D. · 2003 to 2007
$6.7M
TRANSFORMING GENES OF AVIAN SARCOMA VIRUSESR01CA029339 · NCI · ROCKEFELLER UNIVERSITY · PI WANG, LU-HAI · 1985 to 2006
$2.3M
NCI NIH HHS CA29339NCI NIH HHS R01 CA029339NIDDK NIH HHS DK62345NIDDK NIH HHS P01 DK062345
6 · The paper itself

Abstract

Transformation of chicken fibroblasts in vitro by Rous Sarcoma Virus represents a model of cancer in which a single oncogene, viral src, uniformly and rapidly transforms primary cells in culture. We experimentally surveyed the transcriptional program affected by Rous Sarcoma Virus (RSV) in primary culture of chicken embryo fibroblasts. As a control, we used cells infected with non-transforming RSV mutant td106, in which the src gene was deleted. Using Affymetrix GeneChip Chicken Genome Arrays, we report 811 genes that were modulated more than 2.5 fold in the virus transformed cells. Among these, 409 genes were induced and 402 genes were repressed by viral src. From the repertoire of modulated genes, we selected 20 genes that were robustly changed. We then validated and quantified the transcriptional changes of most of the 20 selected genes by real-time PCR. The set of strongly induced genes contains vasoactive intestinal polypeptide, MAP kinase phosphatase 2 and follistatin, among others. The set of strongly repressed genes contains TGF beta 3, TGF beta-induced gene, and deiodinase. The function of several robustly modulated genes sheds new light on the molecular mechanism of oncogenic transformation.

Indexed as

Genes, srcAnimalsBase SequenceCells, CulturedCell Transformation, ViralChick EmbryoDNA PrimersDNA, ViralGene Expression ProfilingGenes, ViralModels, GeneticOligonucleotide Array Sequence AnalysisRous sarcoma virusSignal TransductionTranscription, GeneticDNA PrimersDNA, Viral

Identifiers

PMID17448514
PMCPMC1974879
OpenAlexW2078336615

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.