Evidence map›Paper›PMID 17448252›Full record

ArticleGenome biology2007

Global analyses of mRNA translational control during early Drosophila embryogenesis.

Xiaoli Qin, Soyeon Ahn, Terence P Speed, Gerald M Rubin

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Mistranslating tRNA variants have anticodon- and sex-specific impacts onbioRxiv : the preprint server for biology · 2024
    Article
  5. Article
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  8. Analysis of mRNA Translation by Polysome Profiling.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Tissue-specific expression of ribosomal protein paralogue eRpL22-like in Drosophila melanogaster eye development.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
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  13. Review
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  18. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Xiaoli QinHoward Hughes Medical Institute, Department of Molecular & Cellular Biology, University of California, Berkeley, Berkeley, CA 94720, USA. xlchin@gmail.com
Soyeon Ahn
Terence P Speed
Gerald M Rubin
University of California, Berkeley · USHoward Hughes Medical Institute · US

Funding

Statistical Design &Analysis of Microarray ExperimentsR01LM007609 · NLM · UNIVERSITY OF CALIFORNIA BERKELEY · PI DUDOIT, SANDRINE · 2002 to 2004
$1.2M
NLM NIH HHS LM07609NLM NIH HHS R01 LM007609
6 · The paper itself

Abstract

backgroundIn many animals, the first few hours of life proceed with little or no transcription, and developmental regulation at these early stages is dependent on maternal cytoplasm rather than the zygotic nucleus. Translational control is critical for early Drosophila embryogenesis and is exerted mainly at the gene level. To understand post-transcriptional regulation during Drosophila early embryonic development, we used sucrose polysomal gradient analyses and GeneChip analysis to illustrate the translation profile of individual mRNAs.

resultsWe determined ribosomal density and ribosomal occupancy of over 10,000 transcripts during the first ten hours after egg laying.

conclusionWe report the extent and general nature of gene regulation at the translational level during early Drosophila embryogenesis on a genome-wide basis. The diversity of the translation profiles indicates multiple mechanisms modulating transcript-specific translation. Cluster analyses suggest that the genes involved in some biological processes are co-regulated at the translational level at certain developmental stages.

Indexed as

Gene Expression Regulation, DevelopmentalProtein BiosynthesisAnimalsCluster AnalysisDrosophilaEmbryonic DevelopmentEmbryo, NonmammalianPolyribosomesRibosomesRNA 5' Terminal Oligopyrimidine SequenceRNA, MessengerRNA, Messenger

Identifiers

PMID17448252
PMCPMC1896012
OpenAlexW2168679249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.