Evidence map›Paper›PMID 17442796›Full record

ArticleJournal of clinical microbiology2007

High-resolution genetic fingerprinting of European strains of Anaplasma phagocytophilum by use of multilocus variable-number tandem-repeat analysis.

Kevin J Bown, Xavier Lambin, Nicholas H Ogden, Miroslav Petrovec, Susan E Shaw, Zerai Woldehiwet, Richard J Birtles

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Molecular detection and characterization ofInternational journal for parasitology. Parasites and wildlife · 2025
    Article
  2. Article
  3. Vector-Borne Agents in Species of Silky Anteater (Pathogens (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Article
  6. Tick-Borne Bacterial Diseases in Europe: Threats to public health.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Review
  7. Preparing Collared Peccary (Pathogens (Basel, Switzerland) · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Epidemiological and Clinicopathological Features ofFrontiers in veterinary science · 2021
    Review
  12. Article
  13. Prevalence and co-infection with tick-borneInternational journal for parasitology. Parasites and wildlife · 2019
    Article
  14. Article
  15. Article
  16. Multiple infections ofVeterinary world · 2016
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kevin J BownInfectious Disease Ecology Group, Faculty of Veterinary Science, University of Liverpool, Leahurst, Neston, Cheshire, CH64 7TE, United Kingdom.
Xavier Lambin
Nicholas H Ogden
Miroslav Petrovec
Susan E Shaw
Zerai Woldehiwet
Richard J Birtles

Funding

Wellcome TrustWellcome Trust 070675/z/03/z
6 · The paper itself

Abstract

Anaplasma phagocytophilum is a widely distributed tick-borne pathogen of humans, livestock, and companion animals. We used in silico methods to identify 10 variable-number tandem-repeat (VNTR) loci within the genome sequence of the A. phagocytophilum HZ strain and used these data to develop a multilocus VNTR-based typing scheme for the species. Having confirmed the stability of four of the loci in replicates of the A. phagocytophilum strain that had been subjected to different numbers of passages through cell cocultures in vitro, we then used this typing scheme to discriminate between 20 A. phagocytophilum strains of diverse geographical and host provenances. Extensive diversity was found at each of the four loci studied, with total allele numbers ranging from 13 to 18 and Hunter-Gaston discriminatory index values ranging from 0.93 to 0.99. Only 2 of the 20 strains examined shared alleles at all four loci. The discriminatory power of VNTR analysis was found to be greater than that of either partial msp4 or 16S rRNA gene sequence comparison. The extremely high sensitivity of this novel approach to the genetic fingerprinting of A. phagocytophilum strains should serve well in molecular epidemiological studies of infection transmission, particularly when fine-scale strain delineation is required.

Indexed as

Bacterial Typing TechniquesAnaplasma phagocytophilumAnimalsBacterial ProteinsBase SequenceCattleDNA FingerprintingDogsEuropeHumansMembrane ProteinsMinisatellite RepeatsMolecular Sequence DataPhylogenySensitivity and SpecificitySequence Analysis, DNABacterial ProteinsMembrane Proteins

Identifiers

PMID17442796
PMCPMC1933113

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.