Evidence map›Paper›PMID 17437998›Full record

ArticleGenes & development2007

Single-stranded DNA-binding proteins regulate the abundance of LIM domain and LIM domain-binding proteins.

Zhixiong Xu, Xianzhang Meng, Ying Cai, Hong Liang, Lalitha Nagarajan, Stephen J Brandt

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Article
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  8. Article
  9. Crystal structure of human LDB1 in complex with SSBP2.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Crystal structure of the LUFS domain of human single-stranded DNA binding Protein 2 (SSBP2).Protein science : a publication of the Protein Society · 2019
    Article
  11. Disparate binding kinetics by an intrinsically disordered domain enables temporal regulation of transcriptional complex formation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Review
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zhixiong XuDepartment of Medicine, Vanderbilt University, Nashville, Tennessee 37232, USA.
Xianzhang Meng
Ying Cai
Hong Liang
Lalitha Nagarajan
Stephen J Brandt
Vanderbilt University · USThe University of Texas MD Anderson Cancer Center · USVA Tennessee Valley Healthcare System · US

Funding

REGULATION AND FUNCTION OF THE TAL1/SCL GENER01HL049118 · NHLBI · VANDERBILT UNIVERSITY · PI BRANDT, STEPHEN J. · 1998 to 2011
$2.4M
SSDP2 Gene Pathway in Myeloid NeoplasmsR01HL074449 · NHLBI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAGARAJAN, LALITHA · 2003 to 2006
$1.3M
NHLBI NIH HHS HL074449NHLBI NIH HHS R01 HL049118NHLBI NIH HHS R01 HL074449NHLBI NIH HHS R01 HL49118
6 · The paper itself

Abstract

The LIM domain-binding protein Ldb1 is an essential cofactor of LIM-homeodomain (LIM-HD) and LIM-only (LMO) proteins in development. The stoichiometry of Ldb1, LIM-HD, and LMO proteins is tightly controlled in the cell and is likely a critical determinant of their biological actions. Single-stranded DNA-binding proteins (SSBPs) were recently shown to interact with Ldb1 and are also important in developmental programs. We establish here that two mammalian SSBPs, SSBP2 and SSBP3, contribute to an erythroid DNA-binding complex that contains the transcription factors Tal1 and GATA-1, the LIM domain protein Lmo2, and Ldb1 and binds a bipartite E-box-GATA DNA sequence motif. In addition, SSBP2 was found to augment transcription of the Protein 4.2 (P4.2) gene, a direct target of the E-box-GATA-binding complex, in an Ldb1-dependent manner and to increase endogenous Ldb1 and Lmo2 protein levels, E-box-GATA DNA-binding activity, and P4.2 and beta-globin expression in erythroid progenitors. Finally, SSBP2 was demonstrated to inhibit Ldb1 and Lmo2 interaction with the E3 ubiquitin ligase RLIM, prevent RLIM-mediated Ldb1 ubiquitination, and protect Ldb1 and Lmo2 from proteasomal degradation. These results define a novel biochemical function for SSBPs in regulating the abundance of LIM domain and LIM domain-binding proteins.

Indexed as

AnimalsBeta-GlobulinsCell Line, TumorChlorocebus aethiopsCHO CellsCOS CellsCricetinaeCricetulusDNA-Binding ProteinsDNA, Single-StrandedErythroid Precursor CellsGATA1 Transcription FactorHomeodomain ProteinsMiceMultiprotein ComplexesPromoter Regions, GeneticBeta-GlobulinsDNA-Binding ProteinsDNA, Single-StrandedGATA1 Transcription FactorHomeodomain ProteinsMultiprotein ComplexesRepressor ProteinsTranscription Factors

Identifiers

PMID17437998
PMCPMC1847712
OpenAlexW2161883018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.