Evidence map›Paper›PMID 17437148›Full record

ArticleJournal of molecular evolution2007

Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals.

Hironobu Fukami, Chaolun Allen Chen, Chi-Yung Chiou, Nancy Knowlton

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Article in Journal of molecular evolution, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 74 citations in OpenAlex.

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  19. The complete mitogenome of the Galaxy Coral,Mitochondrial DNA. Part B, Resources · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 4 countries.

Hironobu FukamiCenter for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093-0202, USA. hfukami@kais.kyoto-u.ac.jp
Chaolun Allen Chen
Chi-Yung Chiou
Nancy Knowlton
Biodiversity Research Center, Academia Sinica · TWScripps Institution of Oceanography · USSmithsonian Tropical Research Institute · PA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analyses of mitochondrial sequences revealed the existence of a group I intron in the cytochrome oxidase subunit 1 (cox1) gene in 13 of 41 genera (20 out of 73 species) of corals conventionally assigned to the suborder Faviina. With one exception, phylogenies of the coral cox1 gene and its intron were concordant, suggesting at most two insertions and many subsequent losses. The coral introns were inferred to encode a putative homing endonuclease with a LAGLI-DADG motif as reported for the cox1 group I intron in the sea anemone Metridium senile. However, the coral and sea anemone cox1 group I introns differed in several aspects, such as the intron insertion site and sequence length. The coral cox1 introns most closely resemble the mitochondrial cox1 group I introns of a sponge species, which also has the same insertion site. The coral introns are also more similar to the introns of several fungal species than to that of the sea anemone (although the insertion site differs in the fungi). This suggests either a horizontal transfer between a sponge and a coral or independent transfers from a similar fungal donor (perhaps one with an identical insertion site that has not yet been discovered). The common occurrence of this intron in corals strengthens the evidence for an elevated abundance of group I introns in the mitochondria of anthozoans.

Indexed as

Amino Acid SequenceAnimalsAnthozoaBase SequenceElectron Transport Complex IVEndonucleasesEvolution, MolecularGene Expression RegulationGenes, MitochondrialIntronsMolecular Sequence DataNucleic Acid ConformationPhylogenyElectron Transport Complex IVEndonucleases

Identifiers

PMID17437148
OpenAlexW2015900743

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.