Evidence map›Paper›PMID 17434526›Full record

ArticleJournal of molecular biology2007

The novel fold of scytovirin reveals a new twist for antiviral entry inhibitors.

Robert L McFeeters, Changyun Xiong, Barry R O'Keefe, Heidi R Bokesch, James B McMahon, Daniel M Ratner, Riccardo Castelli, Peter H Seeberger, R Andrew Byrd

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Production of Plant Proteins and Peptides with Pharmacological Potential.Advances in biochemical engineering/biotechnology · 2024
    Review
  3. Review
  4. Lectins and lectibodies: potential promising antiviral agents.Cellular & molecular biology letters · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Bacterial production of site specificJournal of biomolecular NMR · 2017
    Article
  16. Review
  17. HIV-1 gp120 as a therapeutic target: navigating a moving labyrinth.Expert opinion on therapeutic targets · 2015
    Review
  18. Lectins with anti-HIV activity: a review.Molecules (Basel, Switzerland) · 2015
    Review
  19. Article
  20. Using glycan microarrays to understand immunity.Current opinion in chemical biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Robert L McFeetersStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD 21702-1201, USA.
Changyun Xiong
Barry R O'Keefe
Heidi R Bokesch
James B McMahon
Daniel M Ratner
Riccardo Castelli
Peter H Seeberger
R Andrew Byrd
National Cancer Institute · USETH Zurich · CHTarget (United States) · USMassachusetts Institute of Technology · US

Funding

Molecular Targets Development ProgramZ01BC010469 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MCMAHON, JAMES · 2003 to 2008
$9.6M
Structural Biology of Proteins Involved in Signal Transduction and Regulation ofZ01BC010346 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BYRD, R ANDREW · 2000 to 2008
$1.7M
Structural Biology of an Antiviral Entry InhibitorZ01BC011129 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BYRD, R · 2008 to 2008
$265k
Intramural NIH HHS Z01 BC010346NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

The solution structure of the potent 95 residue anti-HIV protein scytovirin has been determined and two carbohydrate-binding sites have been identified. This unique protein, containing five structurally important disulfide bonds, demonstrates a novel fold with no elements of extended regular secondary structure. Scytovirin contains two 39 residue sequence repeats, differing in only three amino acid residues, and each repeat has primary sequence similarity to chitin binding proteins. Both sequence repeats form similarly structured domains, with the exception of one region. The result is two carbohydrate-binding sites with substantially different affinities. The unusual fold clusters aromatic residues in both sites, suggesting a binding mechanism similar to other known hevein-like carbohydrate-binding proteins but differing in carbohydrate specificity. Scytovirin, originally isolated from the cyanobacterium Scytonema varium, holds potential as an HIV entry inhibitor for both therapeutic and prophylactic anti-HIV applications. The high-resolution structural studies reported are an important initial step in unlocking the therapeutic potential of scytovirin.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceAnti-HIV AgentsBacterial ProteinsBinding SitesCarbohydrate SequenceCarrier ProteinsDisulfidesHumansLectinsMembrane ProteinsModels, MolecularMolecular Sequence DataMolecular StructureNuclear Magnetic Resonance, BiomolecularOligosaccharidesAnti-HIV AgentsBacterial ProteinsCarrier ProteinsDisulfidesLectinsMembrane ProteinsOligosaccharidesRecombinant Proteinsscytovirin protein, S varium

Identifiers

PMID17434526
PMCPMC2696897
OpenAlexW2139114486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.