Evidence map›Paper›PMID 17433733›Full record

ArticleBlood cells, molecules & diseases

Deletion of the human beta-globin LCR 5'HS4 or 5'HS1 differentially affects beta-like globin gene expression in beta-YAC transgenic mice.

Halyna Fedosyuk, Kenneth R Peterson

Open access · greenAbstract readComparative Study
In one paragraph

Article in Blood cells, molecules & diseases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Improved Titer and Gene Transfer by Lentiviral Vectors Using Novel, Small β-Globin Locus Control Region Elements.Molecular therapy : the journal of the American Society of Gene Therapy · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Halyna FedosyukDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Kenneth R Peterson
University of Kansas Medical Center · US

Funding

Regulation of Globin Gene Switching in Human ES CellsR01HL067336 · NHLBI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PETERSON, KENNETH R · 2001 to 2004
$1.5M
ROLE OF THE LCR IN HUMAN BETA-GLOBIN GENE REGULATIONR01DK053510 · NIDDK · UNIVERSITY OF WASHINGTON · PI PETERSON, KENNETH R · 1998 to 2001
$513k
Locus-linked Regulatory Motifs of Globin Gene SwitchingR56HL067336 · NHLBI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PETERSON, KENNETH R · 2008 to 2008
$368k
NHLBI NIH HHS HL67336NHLBI NIH HHS R01 HL067336NHLBI NIH HHS R56 HL067336NIDDK NIH HHS DK53510NIDDK NIH HHS R01 DK053510
6 · The paper itself

Abstract

A 213 kb human beta-globin locus yeast artificial chromosome (beta-YAC) was modified by homologous recombination to delete 2.9 kb of cross-species conserved sequence similarity encompassing the LCR 5' hypersensitive site (HS) 4 (Delta5'HS4 beta-YAC). In three transgenic mouse lines, completion of the gamma- to beta-globin switch during definitive erythropoiesis was delayed relative to wild-type beta-YAC mice. In addition, quantitative per-copy human beta-like globin mRNA levels were similar to wild-type beta-YAC transgenic lines, although beta-globin gene expression was slightly decreased in the day 12 fetal liver of Delta5'HS4 beta-YAC mice. A 0.8 kb 5'HS1 fragment was similarly deleted in the YAC. Three Delta5'HS1 beta-YAC transgenic lines were established. epsilon-globin gene expression was markedly reduced, approximately 16 fold, during primitive erythropoiesis compared to wild-type beta-YAC mice, but gamma-globin expression levels were unaffected. However, during the fetal stage of definitive erythropoiesis, gamma-globin gene expression was decreased approximately 4 fold at day 12 and approximately 5 fold at day 14. Temporal developmental expression profiles of the beta-like globin genes were unaffected by deletion of 5'HS1. Decreased expression of the epsilon- and gamma-globin genes is the first phenotype ascribed to a 5'HS1 mutation in the human beta-globin locus, suggesting that this HS does indeed have a role in LCR function beyond simply a combined synergism with the other LCR HSs.

Indexed as

Base SequenceChromosomes, Artificial, YeastSequence DeletionAnimalsErythropoiesisGene Expression Regulation, DevelopmentalGlobinsHumansLocus Control RegionMiceMice, TransgenicGlobins

Identifiers

PMID17433733
PMCPMC1934938
OpenAlexW2057100779

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.