Evidence map›Paper›PMID 17431400›Full record

ArticleThe EMBO journal2007

Embryonic and fetal beta-globin gene repression by the orphan nuclear receptors, TR2 and TR4.

Osamu Tanabe, David McPhee, Shoko Kobayashi, Yannan Shen, William Brandt, Xia Jiang, Andrew D Campbell, Yei-Tsung Chen, Chawn shang Chang, Masayuki Yamamoto and 2 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04432623 (A Phase 1b Sequential Open Label Dose-Ranging Study of Safety, Pharmacokinetics, and Preliminary Activity of Benserazide in Subjects With Beta Thalassemia Intermedia and Sickle Cell Disease), which is not on this map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04432623 phase1 / phase2enrolling by invitationnot on this mapstarted 2020, after this paper: background citation

A Phase 1b Sequential Open Label Dose-Ranging Study of Safety, Pharmacokinetics, and Preliminary Activity of Benserazide in Subjects With Beta Thalassemia Intermedia and Sickle Cell Disease

TypeinterventionalSponsorPhoenicia BioScienceRan2020 to 2026Enrolled36ConditionsBeta Thalassemia Intermedia, Sickle Cell DiseaseArmsBenserazide Only Product
3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Role of Nuclear Receptors in Controlling Erythropoiesis.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Physiological and Aberrant γ-Globin Transcription During Development.Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Potential role of LSD1 inhibitors in the treatment of sickle cell disease: a review of preclinical animal model data.American journal of physiology. Regulatory, integrative and comparative physiology · 2018
    Review
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Osamu TanabeDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109-2200, USA.
David McPhee
Shoko Kobayashi
Yannan Shen
William Brandt
Xia Jiang
Andrew D Campbell
Yei-Tsung Chen
Chawn shang Chang
Masayuki Yamamoto
Keiji Tanimoto
James Douglas Engel
University of Michigan–Ann Arbor · USUniversity of Rochester Medical Center · USUniversity of Tsukuba · JP

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
EXPRESSION OF DEVELOPMENTALLY RELATED AVIAN GENESR01HL024415 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGEL, JAMES DOUGLAS · 1985 to 2009
$3.3M
DRED repression of embryonic/fetal globin gene transcription*R01HL073465 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGEL, JAMES DOUGLAS · 2003 to 2005
$866k
NCI NIH HHS CA46592NCI NIH HHS P30 CA046592NHLBI NIH HHS HL24415NHLBI NIH HHS HL73465NHLBI NIH HHS R01 HL024415NHLBI NIH HHS R01 HL073465NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

The TR2 and TR4 orphan nuclear receptors comprise the DNA-binding core of direct repeat erythroid definitive, a protein complex that binds to direct repeat elements in the embryonic and fetal beta-type globin gene promoters. Silencing of both the embryonic and fetal beta-type globin genes is delayed in definitive erythroid cells of Tr2 and Tr4 null mutant mice, whereas in transgenic mice that express dominant-negative TR4 (dnTR4), human embryonic epsilon-globin is activated in primitive and definitive erythroid cells. In contrast, human fetal gamma-globin is activated by dnTR4 only in definitive, but not in primitive, erythroid cells, implicating TR2/TR4 as a stage-selective repressor. Forced expression of wild-type TR2 and TR4 leads to precocious repression of epsilon-globin, but in contrast to induction of gamma-globin in definitive erythroid cells. These temporally specific, gene-selective alterations in epsilon- and gamma-globin gene expression by gain and loss of TR2/TR4 function provide the first genetic evidence for a role for these nuclear receptors in sequential, gene-autonomous silencing of the epsilon- and gamma-globin genes during development, and suggest that their differential utilization controls stage-specific repression of the human epsilon- and gamma-globin genes.

Indexed as

Gene SilencingAmino Acid SequenceAnimalsBase SequenceCell LineEmbryo, MammalianErythroid CellsFetusGlobinsHumansMiceMice, TransgenicMolecular Sequence DataNuclear Receptor Subfamily 2, Group C, Member 1Promoter Regions, GeneticReceptors, SteroidGlobinsNR2C1 protein, humanNr2c1 protein, mouseNr2c2 protein, mouseNuclear Receptor Subfamily 2, Group C, Member 1Receptors, SteroidReceptors, Thyroid Hormone

Identifiers

PMID17431400
PMCPMC1864974
OpenAlexW2158915039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.