Evidence map›Paper›PMID 17431399›Full record

ArticleThe EMBO journal2007

A novel ISWI is involved in VSG expression site downregulation in African trypanosomes.

Katie Hughes, Matthew Wand, Lucy Foulston, Rosanna Young, Kate Harley, Stephen Terry, Klaus Ersfeld, Gloria Rudenko

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. A factor integrating transcription and repression of surface antigen genes in African trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
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  11. Article
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  14. Regulation of Antigenic Variation byPathogens (Basel, Switzerland) · 2021
    Review
  15. Mining the pervasiveness of surra in different animal species of Northeastern states of India: Assam, Mizoram and Tripura.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2021
    Article
  16. Review
  17. Article
  18. Characterising ISWI chromatin remodeler in Trypanosoma cruzi.Memorias do Instituto Oswaldo Cruz · 2020
    Article
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Katie HughesPeter Medawar Building for Pathogen Research, University of Oxford, Oxford, UK.
Matthew Wand
Lucy Foulston
Rosanna Young
Kate Harley
Stephen Terry
Klaus Ersfeld
Gloria Rudenko
University of Oxford · GBMedawar Building for Pathogen Research · GBUniversity of Hull · GB

Funding

Wellcome Trust 095161
6 · The paper itself

Abstract

African trypanosomes show monoallelic expression of one of about 20 telomeric variant surface glycoprotein (VSG) gene-expression sites (ESs) while multiplying in the mammalian bloodstream. We screened for genes involved in ES silencing using flow cytometry and RNA interference (RNAi). We show that a novel member of the ISWI family of SWI2/SNF2-related chromatin-remodelling proteins (TbISWI) is involved in ES downregulation in Trypanosoma brucei. TbISWI has an atypical protein architecture for an ISWI, as it lacks characteristic SANT domains. Depletion of TbISWI by RNAi leads to 30-60-fold derepression of ESs in bloodstream-form T. brucei, and 10-17-fold derepression in insect form T. brucei. We show that although blocking synthesis of TbISWI leads to derepression of silent VSG ES promoters, this does not lead to fully processive transcription of silent ESs, or an increase in ES-activation rates. VSG ES activation in African trypanosomes therefore appears to be a multistep process, whereby an increase in transcription from a silent ES promoter is necessary but not sufficient for full ES activation.

Indexed as

Adenosine TriphosphatasesAllelesAmino Acid SequenceAnimalsCell NucleusDown-RegulationGene SilencingMolecular Sequence DataPromoter Regions, GeneticProtein Structure, TertiaryRNA InterferenceTranscription FactorsTrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaAdenosine TriphosphatasesISWI proteinTranscription FactorsVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID17431399
PMCPMC1864976
OpenAlexW2171372104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.