Evidence map›Paper›PMID 17429746›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2007

Localization and transcription of a retrotransposon-derived element on the maize B chromosome.

Jonathan C Lamb, Nicole C Riddle, Ya-Ming Cheng, James Theuri, James A Birchler

Abstract read
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In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Cytogenetic analysis and physical mapping of maize B chromosome deficiencies induced by the r-X1 deletion.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  2. Review
  3. Article
  4. Identification of cDNA-AFLP fragments associated with the B chromosome from different developmental stages of maize anthers.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  5. Article
  6. Review
  7. The r-X1 deletion induces terminal deficiencies in the maize B chromosome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  8. Article
  9. Article
  10. The maize B chromosome is capable of expressing microRNAs and altering the expression of microRNAs derived from A chromosomes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Cytomolecular characterization and origin of de novo formed maize B chromosome variants.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jonathan C LambDivision of Biological Sciences, University of Missouri-Columbia, Columbia, MO 65211, USA.
Nicole C Riddle
Ya-Ming Cheng
James Theuri
James A Birchler

Funding

Gene expression effects of heterosis and ploidy levelF32GM069141 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI RIDDLE, NICOLE · 2003 to 2005
$91k
NIGMS NIH HHS F32 GM069141
6 · The paper itself

Abstract

Dispensable chromosomes in addition to the normal complement in diverse taxa are called B chromosomes. The maize B chromosome is discernible in mitotic chromosome spreads as a small compact chromosome composed mainly of heterochromatin. Although much of this chromosome consists of repetitive elements common to the A chromosomes, several sequences specific to the B chromosome have been identified. In the work described here we used the sequence from a B-specific RAPD (random amplification of polymorphic DNA) marker, pBGBM18.2, to isolate another DNA element, StarkB, present in many copies on the B chromosome. StarkB was mapped to the third and fourth blocks of distal heterochromatin using translocation breakpoints and fluorescent in-situ hybridization (FISH). Sequence analysis revealed that StarkB is composed of fragments from the A genome as well as B-specific sequences. The StarkB element is much larger than the other B-specific elements and is not present in large tandem arrays. Different copies of StarkB varied by small insertions, deletions, and duplications as well as single-nucleotide polymorphisms. Reverse transcriptase PCR showed that portions of the StarkB element are expressed. Using the LTR divergence of retroelements interrupting the B-specific sequences, the minimum age of the StarkB repeat array and, by inference, of the B chromosome, was estimated to be 2 million years.

Indexed as

Transcription, GeneticChromosome MappingChromosomesDNA, PlantHeterochromatinRetroelementsSequence Analysis, DNAZea maysDNA, PlantHeterochromatinRetroelements

Identifiers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.