Evidence map›Paper›PMID 17429070›Full record

ArticleMolecular biology of the cell2007

Plc1p is required for SAGA recruitment and derepression of Sko1p-regulated genes.

Nilanjan Guha, Parima Desai, Ales Vancura

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Dicer functions transcriptionally and posttranscriptionally in a multilayer antiviral defense.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  3. Review
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  9. Acetyl-CoA carboxylase regulates global histone acetylation.The Journal of biological chemistry · 2012
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nilanjan GuhaDepartment of Biological Sciences, St. John's University, Queens, NY 11439, USA.
Parima Desai
Ales Vancura
St. John's University · US

Funding

PHOSPHOLIPASE C AND KINETOCHORE FUNCTIONR15GM062183 · NIGMS · ST. JOHN'S UNIVERSITY · PI VANCURA, ALES · 2001 to 2001
$149k
NIGMS NIH HHS GM62183
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, many osmotically inducible genes are regulated by the Sko1p-Ssn6p-Tup1p complex. On osmotic shock, the MAP kinase Hog1p associates with this complex, phosphorylates Sko1p, and converts it into an activator that subsequently recruits Swi/Snf and SAGA complexes. We have found that phospholipase C (Plc1p encoded by PLC1) is required for derepression of Sko1p-Ssn6p-Tup1p-controlled osmoinducible genes upon osmotic shock. Although plc1Delta mutation affects the assembly of the preinitiation complex after osmotic shock, it does not affect the recruitment of Hog1p and Swi/Snf complex at these promoters. However, Plc1p facilitates osmotic shock-induced recruitment of the SAGA complex. Like plc1Delta cells, SAGA mutants are osmosensitive and display compromised expression of osmotically inducible genes. The reduced binding of SAGA to Sko1p-Ssn6p-Tup1p-repressed promoters in plc1Delta cells does not correlate with reduced histone acetylation. However, SAGA functions at these promoters to facilitate recruitment of the TATA-binding protein. The results thus provide evidence that Plc1p and inositol polyphosphates affect derepression of Sko1p-Ssn6p-Tup1p-controlled genes by a mechanism that involves recruitment of the SAGA complex and TATA-binding protein.

Indexed as

Genes, FungalBasic-Leucine Zipper Transcription FactorsBinding SitesModels, BiologicalMutationOsmotic PressurePhosphatidylinositol 4,5-DiphosphatePromoter Regions, GeneticRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsType C PhospholipasesBasic-Leucine Zipper Transcription FactorsPhosphatidylinositol 4,5-DiphosphatePlc1 protein, S cerevisiaeRepressor ProteinsSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSKO1 protein, S cerevisiaeTATA-Box Binding ProteinTrans-ActivatorsType C Phospholipases

Identifiers

PMID17429070
PMCPMC1924823
OpenAlexW1995240203

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.