ArticleGenome biology2007
A major zebrafish polymorphism resource for genetic mapping.
Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species.Database : the journal of biological databases and curation · 2026Article
- Article
- Genome and Transcriptome Sequencing ofInternational journal of molecular sciences · 2020Article
- Practical genotyping by single-nucleotide primer extension.Biology methods & protocols · 2020Article
- Article
- SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish.Development (Cambridge, England) · 2015Article
- trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.BMC bioinformatics · 2014Article
- Loss of col8a1a function during zebrafish embryogenesis results in congenital vertebral malformations.Developmental biology · 2014Article
- A sequence-based variation map of zebrafish.Zebrafish · 2013Article
- Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing.Development (Cambridge, England) · 2012Article
- Mutation mapping and identification by whole-genome sequencing.Genome research · 2012Article
- Efficient mapping and cloning of mutations in zebrafish by low-coverage whole-genome sequencing.Genetics · 2012Article
- Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.Proceedings of the National Academy of Sciences of the United States of America · 2012Article
- The feelgood mutation in zebrafish dysregulates COPII-dependent secretion of select extracellular matrix proteins in skeletal morphogenesis.Disease models & mechanisms · 2011Article
- An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci.G3 (Bethesda, Md.) · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
We have identified 645,088 candidate polymorphisms in zebrafish and observe a single nucleotide polymorphism (SNP) validation rate of 71% to 86%, improving with polymorphism confidence score. Variant sites are non-random, with an excess of specific novel T- and A-rich motifs. We positioned half of the polymorphisms on zebrafish genetic and physical maps as a resource for positional cloning. We further demonstrate bulked segregant analysis using the anchored SNPs as a method for high-throughput genetic mapping in zebrafish.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.