ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2007
An ultradense genetic recombination map for Brassica napus, consisting of 13551 SRAP markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
33 citing papers in PubMed.
- haploMAGIC: accurate phasing and detection of recombination in multiparental populations despite genotyping errors.G3 (Bethesda, Md.) · 2024Article
- Applications of Molecular Markers for Developing Abiotic-Stress-Resilient Oilseed Crops.Life (Basel, Switzerland) · 2022Review
- Adaptation Strategies to Improve the Resistance of Oilseed Crops to Heat Stress Under a Changing Climate: An Overview.Frontiers in plant science · 2021Review
- Skim sequencing: an advanced NGS technology for crop improvement.Journal of genetics · 2021Review
- From molecules to populations: appreciating and estimating recombination rate variation.Nature reviews. Genetics · 2020Review
- Genetic Analysis and Fine Mapping of a Spontaneously Mutated Male Sterility Gene inG3 (Bethesda, Md.) · 2020Article
- Comparative genomics of Eucalyptus and Corymbia reveals low rates of genome structural rearrangement.BMC genomics · 2017Article
- Article
- Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.Frontiers in plant science · 2017Article
- Characterization ofMolecular breeding : new strategies in plant improvement · 2016Article
- High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea.Scientific reports · 2015Article
- High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- High-Density SNP Map Construction and QTL Identification for the Apetalous Character in Brassica napus L.Frontiers in plant science · 2015Article
- Sequence-related amplified polymorphism (SRAP) markers: A potential resource for studies in plant molecular biology(1.).Applications in plant sciences · 2014Article
- Comparative genomics of Brassicaceae crops.Breeding science · 2014Review
- Construction and analysis of high-density linkage map using high-throughput sequencing data.PloS one · 2014Article
- A whole-genome DNA marker map for cotton based on the D-genome sequence of Gossypium raimondii L.G3 (Bethesda, Md.) · 2013Article
- A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.BMC genomics · 2013Article
- An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce.G3 (Bethesda, Md.) · 2013Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sequence related amplified polymorphism (SRAP) was used to construct an ultradense genetic recombination map for a doubled haploid (DH) population in B. napus. A total of 1,634 primer combinations including 12 fluorescently labeled primers and 442 unlabeled ones produced 13,551 mapped SRAP markers. All these SRAPs were assembled in 1,055 bins that were placed onto 19 linkage groups. Ten of the nineteen linkage groups were assigned to the A genome and the remaining nine to the C genome on the basis of the differential SRAP PCR amplification in two DH lines of B. rapa and B. oleracea. Furthermore, all 19 linkage groups were assigned to their corresponding N1-N19 groups of B. napus by comparison with 55 SSR markers used to construct previous maps in this species. In total, 1,663 crossovers were detected, resulting in a map length span of 1604.8 cM. The marker density is 8.45 SRAPs per cM, and there could be more than one marker in 100 kb physical distance. There are four linkage groups in the A genome with more than 800 SRAP markers each, and three linkage groups in the C genome with more 1,000 SRAP markers each. Our studies suggest that a single SRAP map might be applicable to the three Brassica species, B. napus, B. oleracea and B. rapa. The use of this ultra high-density genetic recombination map in marker development and map-based gene cloning is discussed.
Indexed as
Identifiers
17426959What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.