Evidence map›Paper›PMID 17426125›Full record

ArticleNucleic acids research2007

Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain.

Michał Jakób, Robert Kołodziejczyk, Marek Orłowski, Szymon Krzywda, Agnieszka Kowalska, Joanna Dutko-Gwóźdź, Tomasz Gwóźdź, Marian Kochman, Mariusz Jaskólski, Andrzej Ozyhar

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The retinoid X receptors and their ligands.Biochimica et biophysica acta · 2012
    Review
  9. Article
  10. Ecdysteroid hormone action.Cellular and molecular life sciences : CMLS · 2009
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Michał JakóbDepartment of Biochemistry, Faculty of Chemistry, Wrocław University of Technology, Wybrzeze Wyspiańskiego 27, 50-370 Wrocław, Poland.
Robert Kołodziejczyk
Marek Orłowski
Szymon Krzywda
Agnieszka Kowalska
Joanna Dutko-Gwóźdź
Tomasz Gwóźdź
Marian Kochman
Mariusz Jaskólski
Andrzej Ozyhar
Wrocław University of Science and Technology · PLAGH University of Krakow · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The heterodimer of the ecdysone receptor (EcR) and ultraspiracle (Usp), members of the nuclear receptors superfamily, is considered as the functional receptor for ecdysteroids initiating molting and metamorphosis in insects. Here we report the 1.95 A structure of the complex formed by the DNA-binding domains (DBDs) the EcR and the Usp, bound to the natural pseudopalindromic response element. Comparison of the structure with that obtained previously, using an idealized response element, shows how the EcRDBD, which has been previously reported to possess extraordinary flexibility, accommodates DNA-induced structural changes. Part of the C-terminal extension (CTE) of the EcRDBD folds into an alpha-helix whose location in the minor groove does not match any of the locations previously observed for nuclear receptors. Mutational analyses suggest that the alpha-helix is a component of EcR-box, a novel element indispensable for DNA-binding and located within the nuclear receptor CTE. This element seems to be a general feature of all known EcRs.

Indexed as

Models, MolecularResponse ElementsAmino Acid SubstitutionAnimalsBinding SitesCrystallography, X-RayDNADNA-Binding ProteinsDrosophila ProteinsHeat-Shock ProteinsProtein Structure, SecondaryProtein Structure, TertiaryReceptors, SteroidTranscription FactorsDNADNA-Binding ProteinsDrosophila Proteinsecdysone receptorHeat-Shock ProteinsReceptors, SteroidTranscription FactorsUSP protein, Drosophila

Identifiers

PMID17426125
PMCPMC1885670
OpenAlexW2140600009

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.