Evidence map›Paper›PMID 17416899›Full record

ArticleEukaryotic cell2007

Molecular phylogenetics of Candida albicans.

Frank C Odds, Marie-Elisabeth Bougnoux, Duncan J Shaw, Judith M Bain, Amanda D Davidson, Dorothée Diogo, Mette D Jacobsen, Maud Lecomte, Shu-Ying Li, Arianna Tavanti and 3 more

Abstract read
In one paragraph

Article in Eukaryotic cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 173 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
173citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

173 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Exometabolome variation in the fungal pathogen of humansApplied and environmental microbiology · 2026
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  6. An update on clinically relevant, rare, and emergingClinical microbiology reviews · 2025
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  7. Molecular epidemiology ofVirulence · 2025
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  8. Multilocus sequence typing ofOne health (Amsterdam, Netherlands) · 2025
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  13. Article
  14. Article
  15. Review
  16. Article
  17. Identification of an active RNAi pathway inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Strain background ofMicrobiology (Reading, England) · 2024
    Article
  19. Article
  20. Article

113 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Frank C OddsInstitute of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom. f.odds@abdn.ac.uk
Marie-Elisabeth Bougnoux
Duncan J Shaw
Judith M Bain
Amanda D Davidson
Dorothée Diogo
Mette D Jacobsen
Maud Lecomte
Shu-Ying Li
Arianna Tavanti
Martin C J Maiden
Neil A R Gow
Christophe d'Enfert

Funding

Wellcome TrustWellcome Trust 069615Wellcome Trust 074898
6 · The paper itself

Abstract

We analyzed data on multilocus sequence typing (MLST), ABC typing, mating type-like locus (MAT) status, and antifungal susceptibility for a panel of 1,391 Candida albicans isolates. Almost all (96.7%) of the isolates could be assigned by MLST to one of 17 clades. eBURST analysis revealed 53 clonal clusters. Diploid sequence type 69 was the most common MLST strain type and the founder of the largest clonal cluster, and examples were found among isolates from all parts of the world. ABC types and geographical origins showed statistically significant variations among clades by univariate analysis of variance, but anatomical source and antifungal susceptibility data were not significantly associated. A separate analysis limited to European isolates, thereby minimizing geographical effects, showed significant differences in the proportions of isolates from blood, commensal carriage, and superficial infections among the five most populous clades. The proportion of isolates with low antifungal susceptibility was highest for MAT homozygous a/a types and then alpha/alpha types and was lowest for heterozygous a/alpha types. The tree of clades defined by MLST was not congruent with trees generated from the individual gene fragments sequenced, implying a separate evolutionary history for each fragment. Analysis of nucleic acid variation among loci and within loci supported recombination. Computational haplotype analysis showed a high frequency of recombination events, suggesting that isolates had mixed evolutionary histories resembling those of a sexually reproducing species.

Indexed as

Candida albicansEvolution, MolecularGenes, Mating Type, FungalPhylogenyBase SequenceDrug Resistance, FungalHumansMycological Typing TechniquesSequence Analysis, DNA

Identifiers

PMID17416899
PMCPMC1951527

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.