Evidence map›Paper›PMID 17416681›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Tale of two spikes in bacteriophage PRD1.

Juha T Huiskonen, Violeta Manole, Sarah J Butcher

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Viruses of theFrontiers in microbiology · 2023
    Review
  4. Article
  5. Article
  6. A packing for A-form DNA in an icosahedral virus.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Components of Adenovirus Genome Packaging.Frontiers in microbiology · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structure and assembly of complex viruses.Sub-cellular biochemistry · 2013
    Review
  18. Article
  19. Article
  20. Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Juha T HuiskonenDepartment of Biological and Environmental Sciences, Institute of Biotechnology, P.O. Box 65 (Viikinkaani 1), University of Helsinki, FI-0014, Helsinki, Finland.
Violeta Manole
Sarah J Butcher

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural comparisons between bacteriophage PRD1 and adenovirus have revealed an evolutionary relationship that has contributed significantly to current ideas on virus phylogeny. However, the structural organization of the receptor-binding spike complex and how the different symmetry mismatches are mediated between the spike-complex proteins are not clear. We determined the architecture of the PRD1 spike complex by using electron microscopy and three-dimensional image reconstruction of a series of PRD1 mutants. We constructed an atomic model for the full-length P5 spike protein by using comparative modeling. P5 was shown to be bound directly to the penton base protein P31. P5 and the receptor-binding protein P2 form two separate spikes, interacting with each other near the capsid shell. P5, with a tumor necrosis factor-like head domain, may have been responsible for host recognition before capture of the current receptor-binding protein P2.

Indexed as

Bacteriophage PRD1Capsid ProteinsCryoelectron MicroscopyGlycoside HydrolasesModels, MolecularViral Tail ProteinsCapsid ProteinsGlycoside Hydrolasesprotein P5, bacteriophage PRD1tailspike protein, bacteriophageViral Tail Proteins

Identifiers

PMID17416681
PMCPMC1871843

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.