Evidence map›Paper›PMID 17416673›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110.

Nikolaus S Trede, Jan Medenbach, Andrey Damianov, Lee-Hsueh Hung, Gerhard J Weber, Barry H Paw, Yi Zhou, Candace Hersey, Agustin Zapata, Matthew Keefe and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 72 citations in OpenAlex.

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  20. Minor class splicing shapes the zebrafish transcriptome during development.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Nikolaus S TredeInstitute of Biochemistry, Justus-Liebig-University, D-35392 Giessen, Germany.
Jan Medenbach
Andrey Damianov
Lee-Hsueh Hung
Gerhard J Weber
Barry H Paw
Yi Zhou
Candace Hersey
Agustin Zapata
Matthew Keefe
Bruce A Barut
Andrew B Stuart
Tammisty Katz
Chris T Amemiya
Leonard I Zon
Albrecht Bindereif
Howard Hughes Medical Institute · USUniversity of Giessen · DEHarvard University · USHuntsman Cancer Institute · USUniversity of Washington · USBrigham and Women's Hospital · USUniversidad Complutense de Madrid · ES

Funding

Genomics Resources and Infrastucture for the ZebrafishR24RR014085 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AMEMIYA, CHRIS T. · 2000 to 2011
$3.3M
SCREEN FOR LYMPHOID MUTANTSK08HL004233 · NHLBI · UNIVERSITY OF UTAH · PI TREDE, NIKOLAUS S · 2000 to 2004
$623k
NCRR NIH HHS R24 RR014085NHLBI NIH HHS K08 HL004233NHLBI NIH HHS K08 HL04233-05
6 · The paper itself

Abstract

The spliceosome cycle consists of assembly, catalysis, and recycling phases. Recycling of postspliceosomal U4 and U6 small nuclear ribonucleoproteins (snRNPs) requires p110/SART3, a general splicing factor. In this article, we report that the zebrafish earl grey (egy) mutation maps in the p110 gene and results in a phenotype characterized by thymus hypoplasia, other organ-specific defects, and death by 7 to 8 days postfertilization. U4/U6 snRNPs were disrupted in egy mutant embryos, demonstrating the importance of p110 for U4/U6 snRNP recycling in vivo. Surprisingly, expression profiling of the egy mutant revealed an extensive network of coordinately up-regulated components of the spliceosome cycle, providing a mechanism compensating for the recycling defect. Together, our data demonstrate that a mutation in a general splicing factor can lead to distinct defects in organ development and cause disease.

Indexed as

ZebrafishAnimalsDEAD-box RNA HelicasesGenes, LethalMutagenesisOrgan SpecificityPhenotypeRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA Splicing FactorsSpliceosomesThymus GlandZebrafish ProteinsDEAD-box RNA HelicasesRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA Splicing FactorsSART3 protein, zebrafishZebrafish Proteins

Identifiers

PMID17416673
PMCPMC1871833
OpenAlexW1980923267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.