Evidence map›Paper›PMID 17416619›Full record

ArticleBiophysical journal2007

Systematic colocalization errors between acridine orange and EGFP in astrocyte vesicular organelles.

Fabien Nadrigny, Dongdong Li, Klaus Kemnitz, Nicole Ropert, Annette Koulakoff, Stephanie Rudolph, Marco Vitali, Christian Giaume, Frank Kirchhoff, Martin Oheim

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. New tools for investigating astrocyte-to-neuron communication.Frontiers in cellular neuroscience · 2013
    Review
  11. Lack of evidence for vesicular glutamate transporter expression in mouse astrocytes.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
  12. Article
  13. Fast subplasma membrane Ca2+ transients control exo-endocytosis of synaptic-like microvesicles in astrocytes.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2008
    Article
  14. Lysosomes are the major vesicular compartment undergoing Ca2+-regulated exocytosis from cortical astrocytes.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2008
    Article
  15. Resolving vesicle fusion from lysis to monitor calcium-triggered lysosomal exocytosis in astrocytes.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Fabien NadrignyINSERM, U603, Paris, France.
Dongdong Li
Klaus Kemnitz
Nicole Ropert
Annette Koulakoff
Stephanie Rudolph
Marco Vitali
Christian Giaume
Frank Kirchhoff
Martin Oheim
EuroPhoton (Germany) · DEInserm · FRMax Planck Institute of Experimental Medicine · DEUniversité Paris Cité · FRCollège de France · FRNeurophysiologie et nouvelles microscopies · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dual-color imaging of acridine orange (AO) and EGFP fused to a vesicular glutamate transporter or the vesicle-associated membrane proteins 2 or 3 has been used to visualize a supposedly well-defined subpopulation of glutamatergic astrocytic secretory vesicles undergoing regulated exocytosis. However, AO metachromasy results in the concomitant emission of green and red fluorescence from AO-stained tissue. Therefore, the question arises whether AO and EGFP fluorescence can be distinguished reliably. We used evanescent-field imaging with spectral fluorescence detection as well as fluorescence lifetime imaging microscopy to demonstrate that green fluorescent AO monomers inevitably coexist with red fluorescing AO dimers, at the level of single astroglial vesicles. The green monomer emission spectrally overlaps with that of EGFP and produces a false apparent colocalization on dual-color images. On fluorophore abundance maps calculated from spectrally resolved and unmixed single-vesicle spectral image stacks, EGFP is obscured by the strong green monomer fluorescence, precluding the detection of EGFP. Hence, extreme caution is required when deriving quantitative colocalization information from images of dim fluorescing EGFP-tagged organelles colabeled with bright and broadly emitting dyes like AO. We finally introduce FM4-64/EGFP dual-color imaging as a remedy for imaging a distinct population of astroglial fusion-competent secretory vesicles.

Indexed as

Acridine OrangeAnimalsAnimals, NewbornAstrocytesCerebral CortexGreen Fluorescent ProteinsKineticsMiceMice, Inbred StrainsMicroscopy, FluorescenceOrganellesAcridine OrangeGreen Fluorescent Proteins

Identifiers

PMID17416619
PMCPMC1913145
OpenAlexW2140591268

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.