ArticlePlanta2007
Identification of novel small RNAs in tomato (Solanum lycopersicum).
Article in Planta, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
44 citing papers in PubMed, 100 citations in OpenAlex.
- Tomato MicroRNAs and Their Functions.International journal of molecular sciences · 2022Review
- Identification of miRNAs-mediated seed and stone-hardening regulatory networks and their signal pathway of GA-induced seedless berries in grapevine (V. vinifera L.).BMC plant biology · 2021Article
- Noncoding RNAs: functional regulatory factors in tomato fruit ripening.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Comparative transcriptome analysis shows the defense response networks regulated by miR482b.Plant cell reports · 2019Article
- Parsing the Regulatory Network between Small RNAs and Target Genes in Ethylene Pathway in Tomato.Frontiers in plant science · 2017Article
- Rosaceae Fruit Development, Ripening and Post-harvest: An Epigenetic Perspective.Frontiers in plant science · 2017Review
- Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes.Plant biotechnology journal · 2016Article
- Identification of Arbuscular Mycorrhiza (AM)-Responsive microRNAs in Tomato.Frontiers in plant science · 2016Article
- Article
- Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening.Scientific reports · 2015Article
- Article
- Small RNAs in plants: recent development and application for crop improvement.Frontiers in plant science · 2015Review
- High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute.International journal of genomics · 2015Article
- Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis.BMC genomics · 2014Article
- Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants.BMC genomics · 2014Article
- Functional genomics of tomato: opportunities and challenges in post-genome NGS era.Journal of biosciences · 2014Review
- MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporum.PLoS pathogens · 2014Article
- Discovery of Novel Leaf Rust Responsive microRNAs in Wheat and Prediction of Their Target Genes.Journal of nucleic acids · 2014Article
- Molecular cloning and characterisation of SlAGO family in tomato.BMC plant biology · 2013Article
- Identification of microRNAs in Caragana intermedia by high-throughput sequencing and expression analysis of 12 microRNAs and their targets under salt stress.Plant cell reports · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 3 institutions in 1 country.
Funding
Abstract
To date, the majority of plant small RNAs (sRNA) have been identified in rice, poplar and Arabidopsis. To identify novel tomato sRNAs potentially involved in tomato specific processes such as fruit development and/or ripening, we cloned 4,018 sRNAs from tomato fruit tissue at the mature green stage. From this pool of sRNAs, we detected tomato homologues of nine known miRNAs, including miR482; a poplar miRNA not conserved in Arabidopsis or rice. We identified three novel putative miRNAs with flanking sequence that could be folded into a stem-loop precursor structure and which accumulated as 19-24nt RNA. One of these putative miRNAs (Put-miRNA3) exhibited significantly higher expression in fruit compared with leaf tissues, indicating a specific role in fruit development processes. We also identified nine sRNAs that accumulated as 19-24nt RNA species in tomato but genome sequence was not available for these loci. None of the nine sRNAs or three putative miRNAs possessed a homologue in Arabidopsis that had a precursor with a predicted stem-loop structure or that accumulated as a sRNA species, suggesting that the 12 sRNAs we have identified in tomato may have a species specific role in this model fruit species.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.