Evidence map›Paper›PMID 17411438›Full record

ArticleBMC plant biology2007

Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during short- and long-term salt stress in Arabidopsis thaliana.

Jordan B Sottosanto, Yehoshua Saranga, Eduardo Blumwald

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Proteomic profiling ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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  5. The maize geneFrontiers in plant science · 2024
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  6. Review
  7. Physiological and Transcriptional Responses ofInternational journal of molecular sciences · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Ectopic expression ofBiotechnology reports (Amsterdam, Netherlands) · 2022
    Article
  12. Review
  13. Review
  14. Article
  15. Cation/CaFrontiers in plant science · 2021
    Article
  16. Review
  17. Article
  18. Genetic and transcriptional variations in NRAMP-2 and OPAQUE1 genes are associated with salt stress response in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jordan B SottosantoDepartment of Plant Sciences, University of California, Davis, CA 95616, USA. jbso@ucdavis.edu
Yehoshua Saranga
Eduardo Blumwald
Plant (United States) · USDepartment of Plant Biology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAtNHX1, the most abundant vacuolar Na+/H+ antiporter in Arabidopsis thaliana, mediates the transport of Na+ and K+ into the vacuole, influencing plant development and contributing to salt tolerance. In this report, microarray expression profiles of wild type plants, a T-DNA insertion knockout mutant of AtNHX1 (nhx1), and a 'rescued' line (NHX1::nhx1) were exposed to both short (12 h and 48 h) and long (one and two weeks) durations of a non-lethal salt stress to identify key gene transcripts associated with the salt response that are influenced by AtNHX1.

results147 transcripts showed both salt responsiveness and a significant influence of AtNHX1. Fifty-seven of these genes showed an influence of the antiporter across all salt treatments, while the remaining genes were influenced as a result of a particular duration of salt stress. Most (69%) of the genes were up-regulated in the absence of AtNHX1, with the exception of transcripts encoding proteins involved with metabolic and energy processes that were mostly down-regulated.

conclusionWhile part of the AtNHX1-influenced transcripts were unclassified, other transcripts with known or putative roles showed the importance of AtNHX1 to key cellular processes that were not necessarily limited to the salt stress response; namely calcium signaling, sulfur metabolism, cell structure and cell growth, as well as vesicular trafficking and protein processing. Only a small number of other salt-responsive membrane transporter transcripts appeared significantly influenced by AtNHX1.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCation Transport ProteinsCell ProliferationCell WallDNA-Binding ProteinsGene Expression ProfilingMutationProtein TransportRNA, MessengerSignal TransductionSodium ChlorideSodium-Hydrogen ExchangersSulfurArabidopsis ProteinsCation Transport ProteinsDNA-Binding ProteinsNHX1 protein, ArabidopsisRNA, MessengerSodium ChlorideSodium-Hydrogen ExchangersSulfur

Identifiers

PMID17411438
PMCPMC1853094
OpenAlexW2059729213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.