Evidence map›Paper›PMID 17410206›Full record

ArticleThe EMBO journal2007

Germline transcription from T-cell receptor Vbeta gene is uncoupled from allelic exclusion.

Jingquan Jia, Motonari Kondo, Yuan Zhuang

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Peripheral subnuclear positioning suppresses Tcrb recombination and segregates Tcrb alleles from RAG2.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Antigen receptor allelic exclusion: an update and reappraisal.Journal of immunology (Baltimore, Md. : 1950) · 2010
    Review
  11. Article
  12. Article
  13. Review
  14. Mechanics of T cell receptor gene rearrangement.Current opinion in immunology · 2009
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jingquan JiaDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Motonari Kondo
Yuan Zhuang
Duke Medical Center · USDuke University Hospital · US

Funding

HEB MEDIATED PATHWAYS AND FUNCTION IN T CELL DEVELOPMENTR01GM059638 · NIGMS · DUKE UNIVERSITY · PI CHAN, FRANCIS KAMING · 1999 to 2021
$6.9M
NIGMS NIH HHS R01 GM059638NIGMS NIH HHS R01GM059638
6 · The paper itself

Abstract

Allelic exclusion operates in B and T lymphocytes to ensure clonal expression of antigen receptors after V(D)J recombination. Germline transcription, which proceeds V(D)J recombination, has been postulated to provide an instructive signal for allelic exclusion. Here, we use a genetic marker to track germline transcription from a Vbeta gene within the TCRbeta locus. We find that developing thymocytes exhibit uniformed, bi-allelic activation of the Vbeta gene before V-DJ recombination, a process subject to allelic exclusion. We further show that V-DJ rearrangement promotes activation rather than silencing of germline transcription from the remaining Vbeta genes on either the functionally or non-functionally rearranged chromosome. Results presented here suggest that germline transcription, although necessary for V(D)J recombination, is not sufficient to instruct allelic exclusion.

Indexed as

Gene Rearrangement, beta-Chain T-Cell Antigen ReceptorRecombination, GeneticTranscriptional ActivationAllelesAnimalsCD2 AntigensEmbryonic Stem CellsGene SilencingGenetic MarkersHumansMiceMice, Mutant StrainsPeptide FragmentsReceptors, Antigen, T-Cell, alpha-betaT-LymphocytesCD2 AntigensGenetic MarkersPeptide FragmentsReceptors, Antigen, T-Cell, alpha-betaT-cell receptor Vbeta 8.2

Identifiers

PMID17410206
PMCPMC1864970
OpenAlexW2092728713

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.