ArticleGenetics2007
Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database.
Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed, 21 citations in OpenAlex.
- Development of the Organonitrogen Biodegradation Database: Teaching Bioinformatics and Collaborative Skills to Undergraduates during a Pandemic.Journal of microbiology & biology education · 2021Article
- Undergraduate Virtual Engagement in Community Genome Annotation Provides Flexibility to Overcome Course Disruptions.Journal of microbiology & biology education · 2021Article
- A quick guide for student-driven community genome annotation.PLoS computational biology · 2019Article
- Validation of automated artificial intelligence segmentation of optical coherence tomography images.PloS one · 2019Article
- Investigating Cell Signaling with Gene Expression Datasets.CourseSource · 2019Article
- A critical analysis of assessment quality in genomics and bioinformatics education research.CBE life sciences education · 2013Article
- MaizeGDB: curation and outreach go hand-in-hand.Database : the journal of biological databases and curation · 2011Article
- Article
- Interdisciplinary training in mathematical biology through team-based undergraduate research and courses.CBE life sciences education · 2010Article
- Towards large-scale sample annotation in gene expression repositories.BMC bioinformatics · 2009Article
- Article
- Microdissection of shoot meristem functional domains.PLoS genetics · 2009Article
- Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).The Plant journal : for cell and molecular biology · 2007Article
- Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem.PLoS genetics · 2007Article
Corrections and comments
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Through a multi-university and interdisciplinary project we have involved undergraduate biology and computer science research students in the functional annotation of maize genes and the analysis of their microarray expression patterns. We have created a database to house the results of our functional annotation of >4400 genes identified as being differentially regulated in the maize shoot apical meristem (SAM). This database is located at http://sam.truman.edu and is now available for public use. The undergraduate students involved in constructing this unique SAM database received hands-on training in an intellectually challenging environment, which has prepared them for graduate and professional careers in biological sciences. We describe our experiences with this project as a model for effective research-based teaching of undergraduate biology and computer science students, as well as for a rich professional development experience for faculty at predominantly undergraduate institutions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.