Evidence map›Paper›PMID 17404221›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Composite synthetic lethal identification of membrane traffic inhibitors.

Mara C Duncan, David G Ho, Jing Huang, Michael E Jung, Gregory S Payne

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Regulated vesicular trafficking of specific PCDH15 and VLGR1 variants in auditory hair cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2012
    Article
  10. Article
  11. Substrate specificity of the TIM22 mitochondrial import pathway revealed with small molecule inhibitor of protein translocation.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mara C DuncanDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.
David G Ho
Jing Huang
Michael E Jung
Gregory S Payne
University of California, Los Angeles · US

Funding

Clathrin adaptor function at the trans Golgi network and endosomesR01GM067911 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PAYNE, GREGORY S · 2004 to 2007
$1.1M
Chemical inhibition of post Golgi trafficF32DK062608 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUNCAN, MARA C · 2004 to 2006
$154k
NIDDK NIH HHS DK062608NIDDK NIH HHS F32 DK062608NIGMS NIH HHS GM67911NIGMS NIH HHS R01 GM067911
6 · The paper itself

Abstract

Small molecule inhibitors provide powerful tools to characterize highly dynamic and complex eukaryotic cell pathways such as those mediating membrane traffic. However, a lack of easy and generalizable assays has constrained identification of novel inhibitors despite availability of diverse chemical libraries. Here, we report a facile growth-based strategy in yeast to screen for pathway-specific inhibitors. The approach uses well characterized synthetic genetic growth defects to guide design of cells genetically sensitized for inhibition of chosen pathways. With this strategy, we identified a family of piperazinyl phenylethanone compounds as inhibitors of traffic between the trans-Golgi network (TGN) and endosomes that depends on the clathrin adaptor complex AP-1. The compounds did not significantly alter other trafficking pathways involving the TGN or endosomes, indicating specificity. Compound treatment also altered localization of AP-1 in mammalian cells. These previously uncharacterized inhibitors will be useful for future studies of clathrin-mediated transport in yeast, and potentially in other organisms. Furthermore, the easily automated technology should be adaptable for identification of inhibitors of other cellular processes.

Indexed as

Adaptor Protein Complex 1Adaptor Proteins, Vesicular TransportCell SurvivalChitinEndosomesGenes, LethalMolecular StructureMutationOrganic ChemicalsProtein TransportSaccharomyces cerevisiae Proteinstrans-Golgi NetworkYeastsAdaptor Protein Complex 1Adaptor Proteins, Vesicular TransportChitinGga2 protein, S cerevisiaeOrganic ChemicalsSaccharomyces cerevisiae Proteins

Identifiers

PMID17404221
PMCPMC1851079
OpenAlexW2142622002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.