Evidence map›Paper›PMID 17403929›Full record

ArticleThe Journal of cell biology2007

Dolichol-linked oligosaccharide selection by the oligosaccharyltransferase in protist and fungal organisms.

Daniel J Kelleher, Sulagna Banerjee, Anthony J Cura, John Samuelson, Reid Gilmore

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of cell biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Quantitative Profiling of N-linked Glycosylation Machinery in YeastMolecular & cellular proteomics : MCP · 2018
    Article
  8. Single-subunit oligosaccharyltransferases ofThe Journal of biological chemistry · 2017
    Article
  9. Article
  10. Article
  11. Review
  12. Generation and degradation of free asparagine-linked glycans.Cellular and molecular life sciences : CMLS · 2015
    Review
  13. Review
  14. Review
  15. Article
  16. N-linked protein glycosylation in the endoplasmic reticulum.Cold Spring Harbor perspectives in biology · 2013
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Daniel J KelleherDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Sulagna Banerjee
Anthony J Cura
John Samuelson
Reid Gilmore
University of Massachusetts Chan Medical School · USBoston University · US

Funding

ASSEMBLY AND TRANSFER OF N-LINKED OLIGOSACCHARIDESR01GM043768 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GILMORE, JAMES REID · 1990 to 2018
$6.9M
ROBBINS Glycosylation and Glycosidases-Cell and Molecular BiologyR01GM031318 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAMUELSON, JOHN C. · 1985 to 2011
$4.1M
THREE LECTIN MODEL OF AMEBIC ENCYSTATION AND EXCYSTATIONR01AI044070 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI SAMUELSON, JOHN C. · 2000 to 2010
$4.0M
Glycobiology of GiardiaR01AI048082 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SAMUELSON, JOHN C. · 2003 to 2015
$4.0M
PROTEIN GLYCOSYLATION - CELLULAR AND MOLECULAR BIOLOGYR37GM031318 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ROBBINS, PHILLIPS W · 1988 to 1997
–
NIAID NIH HHS AI44070NIAID NIH HHS R01 AI044070NIAID NIH HHS R01 AI048082NIGMS NIH HHS GM31318NIGMS NIH HHS GM43768NIGMS NIH HHS R01 GM031318NIGMS NIH HHS R01 GM043768
6 · The paper itself

Abstract

The dolichol-linked oligosaccharide Glc3Man9GlcNAc2-PP-Dol is the in vivo donor substrate synthesized by most eukaryotes for asparagine-linked glycosylation. However, many protist organisms assemble dolichol-linked oligosaccharides that lack glucose residues. We have compared donor substrate utilization by the oligosaccharyltransferase (OST) from Trypanosoma cruzi, Entamoeba histolytica, Trichomonas vaginalis, Cryptococcus neoformans, and Saccharomyces cerevisiae using structurally homogeneous dolichol-linked oligosaccharides as well as a heterogeneous dolichol-linked oligosaccharide library. Our results demonstrate that the OST from diverse organisms utilizes the in vivo oligo saccharide donor in preference to certain larger and/or smaller oligosaccharide donors. Steady-state enzyme kinetic experiments reveal that the binding affinity of the tripeptide acceptor for the protist OST complex is influenced by the structure of the oligosaccharide donor. This rudimentary donor substrate selection mechanism has been refined in fungi and vertebrate organisms by the addition of a second, regulatory dolichol-linked oligosaccharide binding site, the presence of which correlates with acquisition of the SWP1/ribophorin II subunit of the OST complex.

Indexed as

AnimalsBinding SitesCryptococcus neoformansDolicholsEntamoeba histolyticaFungal ProteinsHexosyltransferasesKineticsMannoseMembrane ProteinsOligosaccharidesProtozoan ProteinsSaccharomyces cerevisiaeSubstrate SpecificityTrichomonas vaginalisTrypanosoma cruziDolicholsdolichyl-diphosphooligosaccharide - protein glycotransferaseFungal ProteinsGlc3Man9GlcNAc2-PP-DolHexosyltransferasesMannoseMembrane ProteinsOligosaccharidesProtozoan Proteins

Identifiers

PMID17403929
PMCPMC2064103
OpenAlexW2144516823

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.