Evidence map›Paper›PMID 17400924›Full record

ArticleProtein science : a publication of the Protein Society2007

The first step of hen egg white lysozyme fibrillation, irreversible partial unfolding, is a two-state transition.

Ming Xu, Victor A Shashilov, Vladimir V Ermolenkov, Laura Fredriksen, Dmitri Zagorevski, Igor K Lednev

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Sound-mediated nucleation and growth of amyloid fibrils.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Lipids uniquely alter secondary structure and toxicity of lysozyme aggregates.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  7. Article
  8. Article
  9. Analysis of core region from egg white lysozyme forming amyloid fibrils.International journal of biological sciences · 2013
    Article
  10. Review
  11. Article
  12. The impact of protein disulfide bonds on the amyloid fibril morphology.International journal of biomedical nanoscience and nanotechnology · 2011
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ming XuDepartment of Chemistry, University at Albany, SUNY, Albany, New York 12222, USA.
Victor A Shashilov
Vladimir V Ermolenkov
Laura Fredriksen
Dmitri Zagorevski
Igor K Lednev
University at Albany, State University of New York · USRensselaer Polytechnic Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amyloid fibril depositions are associated with many neurodegenerative diseases as well as amyloidosis. The detailed molecular mechanism of fibrillation is still far from complete understanding. In our previous study of in vitro fibrillation of hen egg white lysozyme, an irreversible partially unfolded intermediate was characterized. A similarity of unfolding kinetics found for the secondary and tertiary structure of lysozyme using deep UV resonance Raman (DUVRR) and tryptophan fluorescence spectroscopy leads to a hypothesis that the unfolding might be a two-state transition. In this study, chemometric analysis, including abstract factor analysis (AFA), target factor analysis (TFA), evolving factor analysis (EFA), multivariate curve resolution-alternating least squares (ALS), and genetic algorithm, was employed to verify that only two principal components contribute to the DUVRR and fluorescence spectra of soluble fraction of lysozyme during the fibrillation process. However, a definite conclusion on the number of conformers cannot be made based solely on the above spectroscopic data although chemometric analysis suggested the existence of two principal components. Therefore, electrospray ionization mass spectrometry (ESI-MS) was also utilized to address the hypothesis. The protein ion charge state distribution (CSD) envelopes of the incubated lysozyme were well fitted with two principal components. Based on the above analysis, the partial unfolding of lysozyme during in vitro fibrillation was characterized quantitatively and proven to be a two-state transition. The combination of ESI-MS and Raman and fluorescence spectroscopies with advanced statistical analysis was demonstrated to be a powerful methodology for studying protein structural transformations.

Indexed as

Phase TransitionAnimalsChickensFemaleKineticsModels, StatisticalMuramidaseProtein ConformationProtein DenaturationProtein FoldingSpectrometry, FluorescenceSpectrometry, Mass, Electrospray IonizationSpectrum Analysis, RamanTryptophanhen egg lysozymeMuramidaseTryptophan

Identifiers

PMID17400924
PMCPMC2206649
OpenAlexW2024098369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.