Evidence map›Paper›PMID 17400272›Full record

ArticleVirology2007

Alfalfa mosaic virus coat protein bridges RNA and RNA-dependent RNA polymerase in vitro.

Vienna L Reichert, Mehee Choi, Jessica E Petrillo, Lee Gehrke

Open access · greenAbstract read
In one paragraph

Article in Virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Vienna L ReichertHarvard-MIT Division of Health Sciences and Technology and Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, MA 02115, USA.
Mehee Choi
Jessica E Petrillo
Lee Gehrke
Harvard University · US

Funding

CONTROL OF CELL FUNCTION VIA SELECTIVE MRNA TRANSLATIONR01GM042504 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GEHRKE, LEE · 1989 to 2002
$1.2M
NIGMS NIH HHS GM42504NIGMS NIH HHS R01 GM042504
6 · The paper itself

Abstract

Alfalfa mosaic virus (AMV) RNA replication requires the viral coat protein (CP). AMV CP is an integral component of the viral replicase; moreover, it binds to the viral RNA 3'-termini and induces the formation of multiple new base pairs that organize the RNA conformation. The results described here suggest that AMV coat protein binding defines template selection by organizing the 3'-terminal RNA conformation and by positioning the RNA-dependent RNA polymerase (RdRp) at the initiation site for minus strand synthesis. RNA-protein interactions were analyzed by using a modified Northwestern blotting protocol that included both viral coat protein and labeled RNA in the probe solution ("far-Northwestern blotting"). We observed that labeled RNA alone bound the replicase proteins poorly; however, complex formation was enhanced significantly in the presence of AMV CP. The RNA-replicase bridging function of the AMV CP may represent a mechanism for accurate de novo initiation in the absence of canonical 3' transfer RNA signals.

Indexed as

Alfalfa mosaic virusBase SequenceCapsid ProteinsIn Vitro TechniquesMacromolecular SubstancesMolecular Sequence DataNucleic Acid ConformationProtein BindingRecombinant ProteinsRNA-Dependent RNA PolymeraseRNA, ViralVirus ReplicationCapsid ProteinsMacromolecular SubstancesRecombinant ProteinsRNA-Dependent RNA PolymeraseRNA, Viral

Identifiers

PMID17400272
PMCPMC2583179
OpenAlexW2080386366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.