Evidence map›Paper›PMID 17395205›Full record

ArticleJournal of molecular biology2007

Crystal structure of a human autoimmune complex between IgM rheumatoid factor RF61 and IgG1 Fc reveals a novel epitope and evidence for affinity maturation.

Stephane Duquerroy, Enrico A Stura, Stéphane Bressanelli, Stella M Fabiane, Marie C Vaney, Dennis Beale, Maureen Hamon, Paolo Casali, Felix A Rey, Brian J Sutton and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Article
  3. Production of Antibodies to Peptide Targets Using Hybridoma Technology.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Article
  5. Review
  6. Loop Grafting between Similar Local Environments for Fc-Silent Antibodies.Journal of chemical information and modeling · 2020
    Article
  7. Article
  8. Article
  9. CmAbs · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Human IgG4: a structural perspective.Immunological reviews · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. Experimental phasing using zinc anomalous scattering.Acta crystallographica. Section D, Biological crystallography · 2012
    Article
  20. B cell TLRs and induction of immunoglobulin class-switch DNA recombination.Frontiers in bioscience (Landmark edition) · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Stephane DuquerroyVirologie Moléculaire et Structurale, CNRS UMR 2472-INRA UMR 1157, 91198 Gif-sur-Yvette, France.
Enrico A Stura
Stéphane Bressanelli
Stella M Fabiane
Marie C Vaney
Dennis Beale
Maureen Hamon
Paolo Casali
Felix A Rey
Brian J Sutton
Michael J Taussig
Centre National de la Recherche Scientifique · FRBabraham Institute · GBKing's College London · GBCEA Paris-Saclay · FRUniversity of California, Irvine · US

Funding

Intrinsic B cell epigenetic regulation of antibody and autoantibody responses by Sirt1R01AI105813 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CASALI, PAOLO · 2014 to 2023
$4.5M
Immunoglobulin class switch DNA recombinationR01AI045011 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 2000 to 2011
$3.8M
Immunology Research Training ProgramT32AI060573 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI PEARLMAN, ERIC · 2005 to 2020
$1.9M
SOMATIC HYPERMUTATION IN HUMAN B CELLSR01AR040908 · NIAMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 1992 to 2005
$1.8M
Immunoglobulin class switch DNA recombinationR56AI045011 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CASALI, PAOLO · 2012 to 2012
$523k
NIAID NIH HHS AI 45011NIAID NIH HHS AI 60573NIAID NIH HHS R01 AI045011NIAID NIH HHS R01 AI105813NIAID NIH HHS R56 AI045011NIAID NIH HHS T32 AI060573NIAMS NIH HHS AR 40908NIAMS NIH HHS R01 AR040908
6 · The paper itself

Abstract

Rheumatoid factors (RF) are autoantibodies that recognize epitopes in the Fc region of immunoglobulin (Ig) G and that correlate with the clinical severity of rheumatoid arthritis (RA). Here we report the X-ray crystallographic structure, at 3 A resolution, of a complex between the Fc region of human IgG1 and the Fab fragment of a monoclonal IgM RF (RF61), derived from an RA patient and with a relatively high affinity for IgG Fc. In the complex, two Fab fragments bind to each Fc at epitopes close to the C terminus, and each epitope comprises residues from both Cgamma3 domains. A central role in the unusually hydrophilic epitope is played by the side-chain of Arg355, accounting for the subclass specificity of RF61, which recognizes IgG1,-2, and -3 in preference to IgG4, in which the corresponding residue is Gln355. Compared with a previously determined complex of a lower affinity RF (RF-AN) bound to IgG4 Fc, in which only residues at the very edge of the antibody combining site were involved in binding, the epitope bound by RF61 is centered in classic fashion on the axis of the V(H):V(L) beta-barrel. The complementarity determining region-H3 loop plays a key role, forming a pocket in which Arg355 is bound by two salt-bridges. The antibody contacts also involve two somatically mutated V(H) residues, reinforcing the suggestion of a process of antigen-driven maturation and selection for IgG Fc during the generation of this RF autoantibody.

Indexed as

Antibody AffinityEpitopesAmino Acid SequenceAntibodies, MonoclonalArthritis, RheumatoidAutoantibodiesAutoantigensCrystallography, X-RayHumansImmunoglobulin FragmentsImmunoglobulin GImmunoglobulin MModels, MolecularMolecular Sequence DataProtein Structure, TertiaryRecombinant Fusion ProteinsAntibodies, MonoclonalAutoantibodiesAutoantigensEpitopesImmunoglobulin FragmentsImmunoglobulin GImmunoglobulin MRecombinant Fusion ProteinsRheumatoid Factor

Identifiers

PMID17395205
PMCPMC4625532
OpenAlexW2112157366

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.