Evidence map›Paper›PMID 17392359›Full record

ArticleJournal of virology2007

Selective and nonselective packaging of cellular RNAs in retrovirus particles.

Samuel J Rulli, Catherine S Hibbert, Jane Mirro, Thoru Pederson, Shyam Biswal, Alan Rein

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 179 citations in OpenAlex.

  1. Article
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  3. The biased adenosine-rich content of the HIV-1 genome serves as a molecular signature that facilitates efficient packaging.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  13. The "basics" of HIV-1 assembly.PLoS pathogens · 2024
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  14. Article
  15. Article
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  18. Review
  19. Article
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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Samuel J RulliHIV Drug Resistance Program, National Cancer Institute-Frederick, P.O. Box B, Frederick, MD 21702-1201, USA.
Catherine S Hibbert
Jane Mirro
Thoru Pederson
Shyam Biswal
Alan Rein
National Cancer Institute · USJohns Hopkins University · USUniversity of Massachusetts Chan Medical School · US

Funding

PILOT STUDY--ACID FOG, AN EXPERIMENTAL MODELP30ES003819 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GROOPMAN, JOHN D · 1985 to 2012
$22.6M
Retrovirus Assembly and MaturationZ01BC010511 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REIN, ALAN · 2003 to 2008
$2.1M
Modifier Role of Nrf2 in Lung Injury and EmphysemaR01HL081205 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BISWAL, SHYAM · 2005 to 2009
$2.0M
RNA PROCESSING AND RIBONUCLEOPROTEINR01GM021595 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI PEDERSON, THORU · 1985 to 2001
$886k
Interactions of Retroviral Proteins with Nucleic AcidsZ01BC010512 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REIN, ALAN · 2003 to 2008
$590k
Intramural NIH HHSNHLBI NIH HHS R01 HL081205NIEHS NIH HHS P30 ES003819NIEHS NIH HHS P30 ES03819NIGMS NIH HHS R01 GM-21595
6 · The paper itself

Abstract

Assembly of retrovirus particles normally entails the selective encapsidation of viral genomic RNA. However, in the absence of packageable viral RNA, assembly is still efficient, and the released virus-like particles (termed "Psi-" particles) still contain roughly normal amounts of RNA. We have proposed that cellular mRNAs replace the genome in Psi- particles. We have now analyzed the mRNA content of Psi- and Psi+ murine leukemia virus (MLV) particles using both microarray analysis and real-time reverse transcription-PCR. The majority of mRNA species present in the virus-producing cells were also detected in Psi- particles. Remarkably, nearly all of them were packaged nonselectively; that is, their representation in the particles was simply proportional to their representation in the cells. However, a small number of low-abundance mRNAs were greatly enriched in the particles. In fact, one mRNA species was enriched to the same degree as Psi+ genomic RNA. Similar results were obtained with particles formed from the human immunodeficiency virus type 1 (HIV-1) Gag protein, and the same mRNAs were enriched in MLV and HIV-1 particles. The levels of individual cellular mRNAs were approximately 5- to 10-fold higher in Psi- than in Psi+ MLV particles, in agreement with the idea that they are replacing viral RNA in the former. In contrast, signal recognition particle RNA was present at the same level in Psi- and Psi+ particles; a minor fraction of this RNA was weakly associated with genomic RNA in Psi+ MLV particles.

Indexed as

AnimalsBlotting, NorthernBlotting, WesternDNA PrimersGene Products, gagHIVHumansLeukemia Virus, MurineMiceOligonucleotide Array Sequence AnalysisRetroviridaeRibonuclease HRNA, ViralTransfectionVirus AssemblyDNA PrimersGene Products, gagRibonuclease HRNA, Viral

Identifiers

PMID17392359
PMCPMC1900105
OpenAlexW2126113447

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.