Evidence map›Paper›PMID 17392337›Full record

ArticleNucleic acids research2007

Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex.

Klaas W Mulder, Arjan B Brenkman, Akiko Inagaki, Niels J F van den Broek, H Th Marc Timmers

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Klaas W MulderDepartment of Physiological Chemistry, University Medical Centre Utrecht, Universiteitsweg 100, Utrecht, The Netherlands.
Arjan B Brenkman
Akiko Inagaki
Niels J F van den Broek
H Th Marc Timmers
University Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efficient transcription is linked to modification of chromatin. For instance, tri-methylation of lysine 4 on histone H3 (H3K4) strongly correlates with transcriptional activity and is regulated by the Bur1/2 kinase complex. We found that the evolutionarily conserved Ccr4-Not complex is involved in establishing H3K4 tri-methylation in Saccharomyces cerevisiae. We observed synthetic lethal interactions of Ccr4-Not components with BUR1 and BUR2. Further analysis indicated that the genes encoding the Not-proteins are essential for efficient regulation of H3K4me3, but not H3K4me1/2, H3K36me2 or H3K79me2/3 levels. Moreover, regulation of H3K4me3 levels by NOT4 is independent of defects in RNA polymerase II loading. We found NOT4 to be important for ubiquitylation of histone H2B via recruitment of the PAF complex, but not for recruitment or activation of the Bur1/2 complex. These results suggest a mechanism in which the Ccr4-Not complex functions parallel to or downstream of the Bur1/2 kinase to facilitate H3K4me3 via PAF complex recruitment.

Indexed as

Cyclin-Dependent KinasesCyclinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesGene DeletionGene Expression Regulation, FungalHistone-Lysine N-MethyltransferaseHistonesLysineMethylationNuclear ProteinsRepressor ProteinsRibonucleasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsBur2 protein, S cerevisiaeCCR4 protein, S cerevisiaeCyclin-Dependent KinasesCyclinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesHistone-Lysine N-MethyltransferaseHistonesLysineMOT2 protein, S cerevisiaeNuclear ProteinsPAF1 protein, S cerevisiaeRepressor ProteinsRibonucleasesSaccharomyces cerevisiae ProteinsSET1 protein, S cerevisiaeSGV1 protein, S cerevisiaeTranscription FactorsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID17392337
PMCPMC1874646
OpenAlexW2062033861

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.