Evidence map›Paper›PMID 17391777›Full record

ArticleMolecular and biochemical parasitology2007

In vivo translation and stability of trans-spliced mRNAs in nematode embryos.

Guofeng Cheng, Leah Cohen, Claudette Mikhli, Marzena Jankowska-Anyszka, Janusz Stepinski, Edward Darzynkiewicz, Richard E Davis

Abstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome research · 2017
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  8. Review
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  13. Article
  14. An improved and secreted luciferase reporter for schistosomes.Molecular and biochemical parasitology · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Guofeng ChengDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Leah Cohen
Claudette Mikhli
Marzena Jankowska-Anyszka
Janusz Stepinski
Edward Darzynkiewicz
Richard E Davis
University of Warsaw · PLCollege of Staten Island · USCity University of New York · USUniversity of Colorado Denver · US

Funding

IN VIVO ANALYSIS OF SL ADDITION IN ASCARIS EMBRYOSR01AI049558 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2000 to 2015
$4.8M
NIAID NIH HHS AI49558NIAID NIH HHS R01 AI049558
6 · The paper itself

Abstract

Spliced leader trans-splicing adds a short exon, the spliced leader (SL), to pre-mRNAs to generate 5' ends of mRNAs. Addition of the SL in metazoa also adds a new cap to the mRNA, a trimethylguanosine (m(3)(2,2,7)GpppN) (TMG) that replaces the typical eukaryotic monomethylguanosine (m7GpppN)(m7G) cap. Both trans-spliced (m3(2,2,7)GpppN-SL-RNA) and not trans-spliced (m7GpppN-RNA) mRNAs are present in the same cells. Previous studies using cell-free systems to compare the overall translation of trans-spliced versus non-trans-spliced RNAs led to different conclusions. Here, we examine the contribution of m3(2,2,7)GpppG-cap and SL sequence and other RNA elements to in vivo mRNA translation and stability in nematode embryos. Although 70-90% of all nematode mRNAs have a TMG-cap, the TMG cap does not support translation as well as an m7G-cap. However, when the TMG cap and SL are present together, they synergistically interact and translation is enhanced, indicating both trans-spliced elements are necessary to promote efficient translation. The SL by itself does not act as a cap-independent enhancer of translation. The poly(A)-tail synergistically interacts with the mRNA cap enhancing translation and plays a greater role in facilitating translation of TMG-SL mRNAs. In general, recipient mRNA sequences between the SL and AUG and the 3' UTR do not significantly contribute to the translation of trans-spliced mRNAs. Overall, the combination of TMG cap and SL contribute to mRNA translation and stability in a manner typical of a eukaryotic m7G-cap and 5' UTRs, but they do not differentially enhance mRNA translation or stability compared to RNAs without the trans-spliced elements.

Indexed as

Protein BiosynthesisRNA StabilityTrans-SplicingAnimalsAscarisBase SequenceHalf-LifeMolecular Sequence DataRNA, HelminthRNA, Spliced LeaderRNA, HelminthRNA, Spliced Leader

Identifiers

PMID17391777
PMCPMC3650844
OpenAlexW2170929168

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.