Evidence map›Paper›PMID 17390093›Full record

ArticleJournal of molecular evolution2007

Evolutionary pathways of the tirant LTR retrotransposon in the Drosophila melanogaster subgroup of species.

Marie Fablet, Sémi Souames, Christian Biémont, Cristina Vieira

Abstract read
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In one paragraph

Article in Journal of molecular evolution, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marie FabletUMR CNRS 5558, Biométrie et Biologie Evolutive, Université de Lyon Université Lyon 1, Villeurbanne, Cedex.
Sémi Souames
Christian Biémont
Cristina Vieira

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tirant, a LTR retrotransposon with copies scattered over the chromosome arms of Drosophila melanogaster, is in the process of being lost from the chromosome arms of most natural populations of the sister species D. simulans. In an attempt to clarify the dynamics and evolution of tirant, we have studied the regulatory and reverse transcriptase regions in copies of the nine closely related species of the D. melanogaster subgroup. We show that tirant is mainly vertically transmitted in these species, with the exception of a horizontal transfer event from an ancestor of D. melanogaster to D. teissieri. We propose that, in four of the species (D. melanogaster, D. simulans, D. sechellia, and D. mauritiana), the observed patterns of evolution of the regulatory region vary with genome constraints and with the history and biogeography of the species.

Indexed as

Evolution, MolecularAnimalsBase SequenceBlotting, SouthernDrosophila melanogasterMolecular Sequence DataPhylogenyPolymorphism, GeneticRegulatory Sequences, Nucleic AcidRetroelementsRNA-Directed DNA PolymeraseSequence AlignmentTerminal Repeat SequencesRetroelementsRNA-Directed DNA Polymerase

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.