Evidence map›Paper›PMID 17389929›Full record

ArticleInternational journal of biological sciences2007

MCEF is localized to the nucleus by protein sequences encoded within three distinct exons, where it represses HIV-1 Tat-transactivation of LTR-directed transcription.

Maksymilian F Niedzielski, Robert Hopewell, Zohra Ismail, Mario C Estable

Open access · goldAbstract readComparative Study
In one paragraph

Article in International journal of biological sciences, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
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  5. Review
  6. Article
  7. AF4 is a critical regulator of the IGF-1 signaling pathway during Purkinje cell development.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2009
    Article
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Maksymilian F NiedzielskiRyerson University, Department of Chemistry & Biology, Toronto, Ontario, M5B2K3, Canada.
Robert Hopewell
Zohra Ismail
Mario C Estable
Toronto Metropolitan University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Translocations between the human Mixed Lineage Leukemia (MLL) and AF4 Family (AFF) member genes, are implicated in leukemia. Mutations to AFFs can disrupt lymphopoesis, CNS development and spermatogenesis. However, despite the growing list of pathologies linked to AFF members, their evolutionary relationship and the structure/function of individual members, remain to be elucidated. Here, we first report that database mining and phylogenetic analysis with AFF proteins from multiple species, revealed two monophyletic sister clades, suggesting a common Bilateria ancestor. We then examined the structure/function of the most recently discovered AFF member, MCEF (also known as AF5q31 or AFF4). In silico, the human MCEF gene was found to have 21 exons, and code for a protein with seven nuclear localization sequences (NLS). In HeLa cells, an MCEF-EGFP fusion protein, localized exclusively to the nucleus. Consequently, we made twenty constructs, expressing MCEF deletion mutants fused to EGFP and/or DsRed fluorescent proteins. Three distinct protein sequences, encoded by three separate MCEF exons, were found to mediate nuclear localization, only two of which were predicted in silico. Importantly, we also found that ectopic expression of MCEF, repressed HIV-1 LTR-directed RNA Polymerase II transcription, at the level of Tat-transactivation. We suggest that portions of MCEF could be exploited for chimeric transcription factor repression (CTFR) of HIV-1.

Indexed as

Transcriptional ActivationActive Transport, Cell NucleusAmino Acid SequenceAnimalsConsensus SequenceDNA, ComplementaryEvolution, MolecularExonsGene Products, tatGenes, ReporterHeLa CellsHIV-1HIV Long Terminal RepeatHumansInvertebratesMolecular Sequence DataAFF4 protein, humanDNA, ComplementaryGene Products, tatNuclear ProteinsRecombinant Fusion ProteinsRepressor ProteinsRNA Polymerase IItat Gene Products, Human Immunodeficiency Virustat peptide (1-72), Human immunodeficiency virus 1Transcriptional Elongation FactorsTranscription Factors

Identifiers

PMID17389929
PMCPMC1820876
OpenAlexW2139262527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.