ArticleBMC genomics2007
Spotted cotton oligonucleotide microarrays for gene expression analysis.
Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 47 citations in OpenAlex.
- Transcriptional Landscape of Cotton Fiber Development and Its Alliance With Fiber-Associated Traits.Frontiers in plant science · 2022Article
- Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne.BMC plant biology · 2016Article
- Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta.PloS one · 2015Article
- The legacy of diploid progenitors in allopolyploid gene expression patterns.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014Review
- Article
- Unravelling gene expression of complex crop genomes.Heredity · 2013Article
- Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP.Journal of genetics · 2013Article
- Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.BMC genomics · 2012Article
- Article
- Marker-assisted breeding as next-generation strategy for genetic improvement of productivity and quality: can it be realized in cotton?International journal of plant genomics · 2011Article
- Article
- Somatic polyploidy promotes cell function under stress and energy depletion: evidence from tissue-specific mammal transcriptome.Functional & integrative genomics · 2010Review
- Near-isogenic cotton germplasm lines that differ in fiber-bundle strength have temporal differences in fiber gene expression patterns as revealed by comparative high-throughput profiling.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Shared probe design and existing microarray reanalysis using PICKY.BMC bioinformatics · 2010Article
- Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).BMC genomics · 2009Article
- Gene expression profiling in peanut using high density oligonucleotide microarrays.BMC genomics · 2009Article
- Diversity of genome research at the 2009 Plant and Animal Genome Conference.Functional & integrative genomics · 2009Article
- Geminivirus-mediated gene silencing from Cotton leaf crumple virus is enhanced by low temperature in cotton.Plant physiology · 2008Article
- Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution.BMC biology · 2008Article
- The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism.PLoS genetics · 2008Article
Corrections and comments
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Authors and funding
13 authors at 6 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMicroarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, two comprehensive assemblies of cotton ESTs were constructed based on three Gossypium species. Using these assemblies as templates, we describe the design and creation and of a publicly available oligonucleotide array for cotton, useful for all four of the cultivated species.
resultsSynthetic oligonucleotide probes were generated from exemplar sequences of a global assembly of 211,397 cotton ESTs derived from >50 different cDNA libraries representing many different tissue types and tissue treatments. A total of 22,787 oligonucleotide probes are included on the arrays, optimized to target the diversity of the transcriptome and previously studied cotton genes, transcription factors, and genes with homology to Arabidopsis. A small portion of the oligonucleotides target unidentified protein coding sequences, thereby providing an element of gene discovery. Because many oligonucleotides were based on ESTs from fiber-specific cDNA libraries, the microarray has direct application for analysis of the fiber transcriptome. To illustrate the utility of the microarray, we hybridized labeled bud and leaf cDNAs from G. hirsutum and demonstrate technical consistency of results.
conclusionThe cotton oligonucleotide microarray provides a reproducible platform for transcription profiling in cotton, and is made publicly available through http://cottonevolution.info.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.