Evidence map›Paper›PMID 1738588›Full record

ArticleNucleic acids research1992

A CT promoter element binding protein: definition of a double-strand and a novel single-strand DNA binding motif.

R Kolluri, T A Torrey, A J Kinniburgh

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 135 citations in OpenAlex.

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  9. Y-box protein-1 is a transcriptional regulator of BMP7.Journal of cellular biochemistry · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

R KolluriDepartment of Human Genetics, Roswell Park Cancer Institute, Buffalo, NY 14263.
T A Torrey
A J Kinniburgh
Roswell Park Comprehensive Cancer Center · US

Funding

REGULATION OF ONCOGENE EXPRESSIONR01CA043661 · NCI · ROSWELL PARK CANCER INSTITUTE · PI KINNIBURGH, ALAN · 1987 to 1989
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NCI NIH HHS CA 43661
6 · The paper itself

Abstract

Numerous genes contain promoter elements that are nuclease hypersensitive. These elements frequently possess polypurine/polypyrimidine stretches and are usually associated with altered chromatin structure. We have previously isolated a clone that binds a class of CT-rich promoter elements. We have further characterized this clone, termed the nuclease-sensitive element protein-1, or NSEP-1. NSEP-1 binds both duplex CT elements and the CT-rich strand of these elements in a 'generic' sequence specific manner and has overlapping but distinct single-and double-strand DNA binding domains. The minimal peptide region sufficient for both duplex and single-strand DNA binding includes two regions rich in basic amino acids flanking an RNP-CS-1 like octapeptide motif. Deletion analysis shows that the single-strand DNA binding activity is mediated by the RNP-CS-1 like octapeptide motif and is the key peptide region necessary for single-strand binding. NSEP-1's affinity for CT rich promoter elements with strand asymmetry in addition to its double- and single-strand DNA binding properties suggests that it may be a member of a class of DNA binding proteins that modulate gene expression by their ability to recognize DNA with unusual secondary structure.

Indexed as

Base SequenceDNADNA-Binding ProteinsDNA Mutational AnalysisDNA, Single-StrandedMolecular Sequence DataPromoter Regions, GeneticDNADNA-Binding ProteinsDNA, Single-Stranded

Identifiers

PMID1738588
PMCPMC310333
OpenAlexW2048437059

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.