Evidence map›Paper›PMID 17384162›Full record

ArticlePlant physiology2007

GIGANTEA regulates phytochrome A-mediated photomorphogenesis independently of its role in the circadian clock.

Karina Andrea Oliverio, María Crepy, Ellen L Martin-Tryon, Raechel Milich, Stacey L Harmer, Jo Putterill, Marcelo J Yanovsky, Jorge J Casal

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
11.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  4. The interplay between the circadian clock and abiotic stress responses mediated by ABF3 and CCA1/LHY.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  6. TheGenes · 2021
    Article
  7. A flowering time locus dependent onMolecular breeding : new strategies in plant improvement · 2021
    Article
  8. Review
  9. Article
  10. Parallel analysis ofOpen biology · 2017
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Natural diversity in daily rhythms of gene expression contributes to phenotypic variation.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. GIGANTEA - an emerging story.Frontiers in plant science · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Karina Andrea OliverioIFEVA, Facultad de Agronomía, Universidad de Buenos Aires and Consejo Nacional de Investigaciones Científicas y Técnicas, 1417-Buenos Aires, Argentina.
María Crepy
Ellen L Martin-Tryon
Raechel Milich
Stacey L Harmer
Jo Putterill
Marcelo J Yanovsky
Jorge J Casal
University of Auckland · NZ

Funding

Molecular analysis of circadian regulation in ArabidopsisR01GM069418 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI HARMER, STACEY L. · 2004 to 2016
$3.3M
NIGMS NIH HHS R01 GM 069418NIGMS NIH HHS R01 GM069418
6 · The paper itself

Abstract

GIGANTEA (GI) is a nuclear protein involved in the promotion of flowering by long days, in light input to the circadian clock, and in seedling photomorphogenesis under continuous red light but not far-red light (FR). Here, we report that in Arabidopsis (Arabidopsis thaliana) different alleles of gi have defects in the hypocotyl-growth and cotyledon-unfolding responses to hourly pulses of FR, a treatment perceived by phytochrome A (phyA). This phenotype is rescued by overexpression of GI. The very-low-fluence response of seed germination was also reduced in gi. Since the circadian clock modulates many light responses, we investigated whether these gi phenotypes were due to alterations in the circadian system or light signaling per se. In experiments where FR pulses were given to dark-incubated seeds or seedlings at different times of the day, gi showed reduced seed germination, cotyledon unfolding, and activity of a luciferase reporter fused to the promoter of a chlorophyll a/b-binding protein gene; however, rhythmic sensitivity was normal in these plants. We conclude that while GI does not affect the high-irradiance responses of phyA, it does affect phyA-mediated very-low-fluence responses via mechanisms that do not obviously involve its circadian functions.

Indexed as

Circadian RhythmLightAllelesArabidopsisArabidopsis ProteinsCotyledonFlowersGerminationHypocotylPhenotypePhytochrome ASeedsSignal TransductionArabidopsis ProteinsGI protein, ArabidopsisPhytochrome A

Identifiers

PMID17384162
PMCPMC1913770
OpenAlexW2105675581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.