Evidence map›Paper›PMID 17376886›Full record

ArticleJournal of clinical microbiology2007

Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus.

J M Bain, A Tavanti, A D Davidson, M D Jacobsen, D Shaw, N A R Gow, F C Odds

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Studies in mycology · 2021
    Review
  9. Article
  10. Article
  11. Molecular Epidemiology ofJournal of fungi (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Global Sexual Fertility in the Opportunistic PathogenJournal of fungi (Basel, Switzerland) · 2020
    Article
  17. A Novel Combination ofAntimicrobial agents and chemotherapy · 2020
    Article
  18. Tracking of deliberately inoculatedFood science and biotechnology · 2020
    Article
  19. Article
  20. Aspergillus fumigatus and Aspergillosis in 2019.Clinical microbiology reviews · 2019
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J M BainSchool of Medical Sciences, Institute of Medical Sciences, University of Aberdeen, Aberdeen AB25 2ZD, United Kingdom.
A Tavanti
A D Davidson
M D Jacobsen
D Shaw
N A R Gow
F C Odds

Funding

Wellcome TrustWellcome Trust 074898
6 · The paper itself

Abstract

A multilocus sequence typing (MLST) scheme was devised for Aspergillus fumigatus. The system involved sequencing seven gene fragments and was applied to a panel of 100 isolates of A. fumigatus from diverse sources. Thirty different sequence types were found among the 100 isolates, and 93% of the isolates differed from the other isolates by only one allele sequence, forming a single clonal cluster as indicated by the eBURST algorithm. The discriminatory power of the MLST method was only 0.93. These results strongly indicate that A. fumigatus is a species of a relatively recent origin, with low levels of sequence dissimilarity. Typing methods based on variable numbers of tandem repeats offer higher levels of strain discrimination. Mating type data for the 100 isolates showed that 71 isolates were type MAT1-2 and 29 isolates were MAT1-1.

Indexed as

Aspergillus fumigatusBase SequenceDNA, FungalGenetic VariationMycological Typing TechniquesPhylogenyDNA, Fungal

Identifiers

PMID17376886
PMCPMC1865896

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.