ArticlePloS one2007
Single feature polymorphism discovery in rice.
Article in PloS one, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays.Plant cell reports · 2017Article
- Microarray-based large scale detection of single feature polymorphism in Gossypium hirsutum L.Journal of genetics · 2015Article
- Single-feature polymorphism mapping of isogenic rice lines identifies the influence of terpene synthase on brown planthopper feeding preferences.Rice (New York, N.Y.) · 2013Article
- Combining bulk segregation analysis and microarrays for mapping of the pH trait in melon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Article
- An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.Molecular ecology resources · 2012Article
- Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).BMC genomics · 2012Article
- 'maskBAD'--a package to detect and remove Affymetrix probes with binding affinity differences.BMC bioinformatics · 2012Article
- Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor).Genome biology · 2011Article
- Detection of copy number variations in rice using array-based comparative genomic hybridization.BMC genomics · 2011Article
- Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars.BMC genomics · 2011Article
- A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus.BMC genomics · 2011Article
- Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers.PloS one · 2011Article
- High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes.PloS one · 2010Article
- Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae.PLoS genetics · 2010Article
- A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.BMC genomics · 2010Article
- High-throughput marker discovery in melon using a self-designed oligo microarray.BMC genomics · 2010Article
- Article
- Allelic genome structural variations in maize detected by array comparative genome hybridization.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding.BMC genomics · 2009Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The discovery of nucleotide diversity captured as single feature polymorphism (SFP) by using the expression array is a high-throughput and effective method in detecting genome-wide polymorphism. The efficacy of such method was tested in rice, and the results presented in the paper indicate high sensitivity in predicting SFP. The sensitivity of polymorphism detection was further demonstrated by the fact that no biasness was observed in detecting SFP with either single or multiple nucleotide polymorphisms. The high density SFP data that can be generated quite effectively by the current method has promise for high resolution genetic mapping studies, as physical location of features are well-defined on rice genome.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.