Evidence map›Paper›PMID 17372208›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

Lu Feng, Wei Wang, Jiansong Cheng, Yi Ren, Guang Zhao, Chunxu Gao, Yun Tang, Xueqian Liu, Weiqing Han, Xia Peng and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 390 citations in OpenAlex.

  1. Article
  2. Article
  3. HalotolerantRSC advances · 2026
    Article
  4. Paired genomic and proteomic analysis ofMicrobiology spectrum · 2026
    Article
  5. Molecular Insights intoLife (Basel, Switzerland) · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Complete genome sequence ofMicrobiology resource announcements · 2025
    Article
  10. Article
  11. Review
  12. High-pressure continuous culturing: life at the extreme.Applied and environmental microbiology · 2025
    Review
  13. Regulation mechanism of the long-chainApplied and environmental microbiology · 2025
    Article
  14. Assessing hydrocarbon degradation capacity ofFrontiers in microbiology · 2025
    Article
  15. Article
  16. Alkane degradation mechanism ofFrontiers in microbiology · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Lu FengTEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin 300457, China.
Wei Wang
Jiansong Cheng
Yi Ren
Guang Zhao
Chunxu Gao
Yun Tang
Xueqian Liu
Weiqing Han
Xia Peng
Rulin Liu
Lei Wang
Tianjin Economic-Technological Development Area · CNNankai University · CN

Funding

Microbiome and intestinal innate immune response in alcoholic liver diseaseR01AA020703 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHNABL, BERND G. · 2011 to 2020
$3.6M
Microbiome and Intestinal Innate Immune Response in Alcoholic Liver DiseaseR37AA020703 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2021 to 2026
$2.5M
NIAAA NIH HHS R01 AA020703NIAAA NIH HHS R37 AA020703
6 · The paper itself

Abstract

The complete genome sequence of Geobacillus thermodenitrificans NG80-2, a thermophilic bacillus isolated from a deep oil reservoir in Northern China, consists of a 3,550,319-bp chromosome and a 57,693-bp plasmid. The genome reveals that NG80-2 is well equipped for adaptation into a wide variety of environmental niches, including oil reservoirs, by possessing genes for utilization of a broad range of energy sources, genes encoding various transporters for efficient nutrient uptake and detoxification, and genes for a flexible respiration system including an aerobic branch comprising five terminal oxidases and an anaerobic branch comprising a complete denitrification pathway for quick response to dissolved oxygen fluctuation. The identification of a nitrous oxide reductase gene has not been previously described in Gram-positive bacteria. The proteome further reveals the presence of a long-chain alkane degradation pathway; and the function of the key enzyme in the pathway, the long-chain alkane monooxygenase LadA, is confirmed by in vivo and in vitro experiments. The thermophilic soluble monomeric LadA is an ideal candidate for treatment of environmental oil pollutions and biosynthesis of complex molecules.

Indexed as

BacillaceaeChemotaxisChinaGenome, BacterialGenomicsMixed Function OxygenasesModels, BiologicalModels, GeneticMolecular Sequence DataOilsOpen Reading FramesOxidoreductasesOxygen ConsumptionProteomicsSignal TransductionMixed Function Oxygenasesnitrous oxide reductaseOilsOxidoreductases

Identifiers

PMID17372208
PMCPMC1838512
OpenAlexW2134037455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.