Evidence map›Paper›PMID 17368499›Full record

ArticleVirology2007

Diversity of escape variant mutations in Simian virus 40 large tumor antigen (SV40 Tag) epitopes selected by cytotoxic T lymphocyte (CTL) clones.

Lawrence M Mylin, Todd D Schell, Melanie Epler, Caroline Kusuma, David Assis, Chelsea Matsko, Alexandra Smith, April Allebach, Satvir S Tevethia

Open access · greenAbstract read
In one paragraph

Article in Virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 84% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lawrence M MylinDepartment of Microbiology and Immunology H107, The Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.
Todd D Schell
Melanie Epler
Caroline Kusuma
David Assis
Chelsea Matsko
Alexandra Smith
April Allebach
Satvir S Tevethia
Messiah University · USPennsylvania State University · US

Funding

CD8+ T Cell-Mediated Immunotherapy of Autochthonous SV40 T Antigen-Induced TumorsR01CA025000 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI SCHELL, TODD D · 1985 to 2014
$5.0M
BIOLOGY OF SV40-SPECIFIC TRANSPLANTATION ANTIGENR37CA025000 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TEVETHIA, SATVIR S. · 1988 to 2002
$1.7M
NCI NIH HHS CA25000NCI NIH HHS R01 CA025000NCI NIH HHS R37 CA025000
6 · The paper itself

Abstract

To better understand the relationship between epitope variation and tumor escape from immune surveillance, SV40 T antigen-transformed B6/K-0 cells were subjected to selection with individual CTL clones specific for the SV40 T antigen H-2D(b)-restricted epitopes I or V. CTL-resistant populations were isolated from a majority of the selection cultures and substituted epitope sequences were identified within most of the resistant populations. Tag sequences deleted of all or portions of the selection-targeted epitope were identified, but in lower numbers compared to epitope sequences bearing single residue substitutions. Relatively few flanking residue substitutions were identified, and only in epitope I-targeted selections. The diversity (numbers and epitope residue locations) of substituted epitope residue positions varied between selections. These findings suggest that the scope of spontaneously occurring mutations that could allow for escape from individual CD8+ T cell clones is large.

Indexed as

Amino Acid SequenceAnimalsAntigens, Polyomavirus TransformingBase SequenceCell Line, TransformedDNA, ViralEpitopesGenetic VariationImmunity, CellularIn Vitro TechniquesMiceMutationSimian virus 40T-Lymphocytes, CytotoxicAntigens, Polyomavirus TransformingDNA, ViralEpitopes

Identifiers

PMID17368499
PMCPMC3866617
OpenAlexW2106509127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.